Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0732
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   6.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   6.6  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 564 SVLFSPFKKKLQFSQKYFRNWSLNNAGPSFLN 469
           +V F+P K KL+F   +  N  L      F+N
Sbjct: 180 AVKFNPAKVKLRFENLFDGNKELGEQMNRFIN 211


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 274 FNTSSSLQHFYFIFNQLNY 330
           F     L HFYF+ N  NY
Sbjct: 222 FTEDVGLNHFYFMLNH-NY 239


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 274 FNTSSSLQHFYFIFNQLNY 330
           F     L HFYF+ N  NY
Sbjct: 222 FTEDVGLNHFYFMLNH-NY 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,281
Number of Sequences: 438
Number of extensions: 2970
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)