Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0732
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34550.1 68414.m04294 expressed protein contains Pfam profile...    29   2.9  
At5g54745.1 68418.m06817 DegP protease family contains similarit...    28   3.8  
At4g09630.1 68417.m01583 expressed protein contains Pfam profile...    27   6.7  

>At1g34550.1 68414.m04294 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616);
           expression supported by MPSS
          Length = 812

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 393 NKKKLQLETSALLDQYLWRKNYLDGYSKMMARHYL 497
           +K +LQL+   +L+ +LWRK +    S    RH L
Sbjct: 583 SKLRLQLDPLLILEYFLWRKGHEYAISNHYDRHCL 617


>At5g54745.1 68418.m06817 DegP protease family contains similarity
           to DegP2 protease [Arabidopsis thaliana]
           gi|13172275|gb|AAK14061
          Length = 198

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 422 RSFGPVFMEEKLPGWIFKNDGPA 490
           +S GPV M  K+ G +F+ND P+
Sbjct: 174 KSGGPVVMGNKVAGVVFENDSPS 196


>At4g09630.1 68417.m01583 expressed protein contains Pfam profile:
           PF04765 protein of unknown function (DUF616)
          Length = 711

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 393 NKKKLQLETSALLDQYLWRKNYLDGYSKMMARHYL 497
           +K +LQL+   +L+ +LWR+ +    S    RH L
Sbjct: 545 SKLRLQLDPLVILEYFLWREGHEYAISNHYDRHCL 579


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,850,173
Number of Sequences: 28952
Number of extensions: 189400
Number of successful extensions: 374
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)