Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0731
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    24   1.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   4.4  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   7.7  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   7.7  

>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 519 ILSYLFFVLVISYT*LLNKKYISKY 593
           ++  LFFV+ I+ +   N KY +KY
Sbjct: 4   LVPLLFFVIAIASSLAENSKYTTKY 28


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +3

Query: 468 FYCIYRSLVITFNLANQILSYLFFVLVISY 557
           FYC +    + F L      Y F +L+  Y
Sbjct: 85  FYCPFIIFTVHFLLCTYYFYYAFIILLCVY 114


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 459 NVNFYCIYRSLVITFNLANQILSYLF 536
           +V F  +Y+ L I  ++    LSY F
Sbjct: 263 SVLFQNVYKPLPIVLSIVKNCLSYCF 288


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 459 NVNFYCIYRSLVITFNLANQILSYLF 536
           +V F  +Y+ L I  ++    LSY F
Sbjct: 263 SVLFQNVYKPLPIVLSIVKNCLSYCF 288


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,974
Number of Sequences: 336
Number of extensions: 2343
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)