Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0731
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0735 - 31579201-31579208,31579402-31579467,31580222-315803...    32   0.54 
05_06_0076 + 25381814-25381880,25382927-25382967,25383398-253835...    31   0.71 

>01_06_0735 -
           31579201-31579208,31579402-31579467,31580222-31580307,
           31580396-31580430,31580586-31580669,31580754-31580843,
           31581267-31581304,31582042-31582108
          Length = 157

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = +3

Query: 15  KAKGVSGLIEVENPNRVVXXXXXXXXXXXXGDVEKPQLSXXXXXXXXXXXXXXXYQKLHA 194
           K KG  GLI++ENPN +V            G  +  +LS               Y KL  
Sbjct: 66  KHKGTEGLIQIENPN-LVKAKNIKAKEVDLG--KTTELSRREREEIEKQKAHERYMKLQE 122

Query: 195 EGKTEQ 212
           +GKTEQ
Sbjct: 123 QGKTEQ 128


>05_06_0076 +
           25381814-25381880,25382927-25382967,25383398-25383502,
           25383612-25383695,25384069-25384103,25384562-25384647,
           25385529-25385594,25385936-25385970
          Length = 172

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
 Frame = +3

Query: 15  KAKGVSGLIEVENPNRVVXXXXXXXXXXXXGDVEKPQLSXXXXXXXXXXXXXXXYQKLHA 194
           K KG  GLIE+ENPN +V            G      LS               + KL  
Sbjct: 72  KHKGTEGLIEIENPN-LVKPKNIKAKDIDIG--RTSDLSRREREELEKQKSHERHMKLQE 128

Query: 195 EGKTEQXXXXXXXXXXXXQQ---AKKQLSAERQRKNLKK 302
           +GKTEQ            QQ   A K+   E+  K+ +K
Sbjct: 129 QGKTEQARKDLERLTLIRQQRAEAAKKREEEKAAKDERK 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,788,281
Number of Sequences: 37544
Number of extensions: 175735
Number of successful extensions: 224
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)