Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0731
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical
           protein F14F8.4 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
 Frame = +3

Query: 468 FYCIYRSLVITFNLA----NQILSYLFFVLVISYT*LLNKKYISKYLTIYSWS*LNVHKT 635
           FY I  ++++T+ LA    N IL   F V++     L + KY+  + ++YS +  ++HK 
Sbjct: 91  FYLITVAILLTYLLAGLYINYILQQTFHVILFLLAILNSLKYLFPFNSVYSQN--SIHKY 148

Query: 636 A**FFVSSLIAYFVYLRIMGKYFYCF 713
              F V+ ++   ++   +  +F CF
Sbjct: 149 VRHFSVAIVLKDVLFFSPLLVHF-CF 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,278,202
Number of Sequences: 27780
Number of extensions: 197287
Number of successful extensions: 399
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)