Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0731
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46020.1 68418.m05659 expressed protein                             33   0.15 
At3g44770.1 68416.m04820 hypothetical protein contains Pfam prof...    29   3.2  
At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative (CH...    28   7.3  
At3g05155.1 68416.m00560 sugar transporter, putative similar to ...    28   7.3  

>At5g46020.1 68418.m05659 expressed protein
          Length = 164

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 29/101 (28%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
 Frame = +3

Query: 15  KAKGVSGLIEVENPNRVVXXXXXXXXXXXXGDVEK-PQLSXXXXXXXXXXXXXXXYQKLH 191
           K KG   +IEV+NPNRV              D  K  +LS               Y +L 
Sbjct: 64  KKKGAEAVIEVDNPNRVRQKTLKAKDL----DASKTTELSRREREELEKQRAHERYMRLQ 119

Query: 192 AEGKTEQXXXXXXXXXXXXQQ---AKKQLSAERQRKNLKKI 305
            +GKTEQ            QQ   A K+   E+  ++ KK+
Sbjct: 120 EQGKTEQARKDLDRLALIRQQREEAAKKREEEKAARDAKKV 160


>At3g44770.1 68416.m04820 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 505

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +2

Query: 623 CSQNSLVIFCIFTYSIFRI----FAYNGKVLLLFYGIL 724
           C  N+ +IFC+F  ++F      F   GK L + YG L
Sbjct: 425 CGPNNCIIFCLFDVALFGYKTIGFKRIGKELAMIYGFL 462


>At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative
           (CHX11) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 671

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
 Frame = +3

Query: 474 CIYRSLVITFNLA-NQILSYLFFVLVISYT*LLNKKYISK----YLTIYS 608
           C+Y  L  + +LA + ILSY  FV  + Y  +L +K+IS+    +L +YS
Sbjct: 266 CLYYKLPRSESLAVSLILSYKSFVEFVLYEAVLEEKFISQATYAFLILYS 315


>At3g05155.1 68416.m00560 sugar transporter, putative similar to
           sugar-porter family protein 1 [Arabidopsis thaliana]
           GI:14585699; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 327

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 230 SEVSARLLR--FTFSVKLLIGCSCSLAFYLFTFTS 132
           +E++ + +R  FTFS +LL  C  + A+YL  F S
Sbjct: 143 AEITPKTVRGTFTFSNQLLQNCGVATAYYLGNFMS 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,211,213
Number of Sequences: 28952
Number of extensions: 166874
Number of successful extensions: 273
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)