Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0730
         (704 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K944 Cluster: RAD protein; n=1; Plasmodium vivax|Rep:...    34   3.9  
UniRef50_Q4GYE9 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  
UniRef50_Q23BX5 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  

>UniRef50_A5K944 Cluster: RAD protein; n=1; Plasmodium vivax|Rep:
           RAD protein - Plasmodium vivax
          Length = 307

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
 Frame = +2

Query: 167 TRVKTKHLH--LDDLRTELNELNTTKYCASEEKRKLWAKSS*YLTGVA*VGLTETKLFF- 337
           +R++T      +D+L +ELN+L++    + EEK+KLW +    ++      L E   ++ 
Sbjct: 179 SRIQTSDFQRVMDNLSSELNKLSSKYGMSEEEKKKLWNECQEEIS----KDLKEVDDYYD 234

Query: 338 -FVDCSMRK*HFAKELLSISSVDALSR-MDSWQSGRGHHFGWWCAFF 472
            F D +M+    A  + + S V +++  ++ W +        WCAFF
Sbjct: 235 KFYDINMQ----ADSVATASFVSSITNFLNMWTNSIDKTEKKWCAFF 277


>UniRef50_Q4GYE9 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 101

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 680 CITSMLINIRCADTP*VIRDSFLIYYYYYLVSTFF 576
           CIT ++  +RC DT  ++  S L+Y+YYY     F
Sbjct: 11  CIT-VICALRCIDTAPILSYSILLYHYYYFCMCVF 44


>UniRef50_Q23BX5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1154

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -1

Query: 314 IQLKPLRSSINWISPTISFSLHWHNILSY-LVHLVLFLDHLSVNALF 177
           I +K L++S N+ SP +    H + I S+ L+HL +FL   ++NA F
Sbjct: 216 IHIKQLKNSFNFTSP-LCTKTHAYYITSFILLHLYIFLPSANLNATF 261


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 619,486,203
Number of Sequences: 1657284
Number of extensions: 10864802
Number of successful extensions: 21626
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21589
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)