Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0730
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    27   3.5  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   6.0  

>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -2

Query: 184 LCFNSSSLICGY*QCSSFLIMYIHYYTYVYLMRSP 80
           +C NS S++  Y    + + MY+H +  + L+ +P
Sbjct: 101 ICSNSYSILVNYGFILNMVHMYVHVFNILILLLAP 135


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 195 KCKCFVLTLVL*YADISSAHHSS*CTSITIL 103
           KCKC +L+L+  Y   S  HH     S+ ++
Sbjct: 531 KCKCSLLSLLKQYIKDSHVHHEVLLISLNLI 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,090
Number of Sequences: 5004
Number of extensions: 49865
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)