Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0729
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.45 
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    24   1.4  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.8  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    23   2.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.5  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.7  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   9.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
 Frame = +1

Query: 82  CVYVFM*NK--IICIYIFLCIFVT*YKFH-----CTYHY 177
           C+Y F+     ++CIY F C F+  +  H     C YH+
Sbjct: 132 CIYYFVVPLFFLLCIYYFYCAFII-FTVHLLFLLCIYHF 169



 Score = 24.6 bits (51), Expect = 0.79
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 109 IICIYIFLCIFVT*YKFHCTYHYLLCTTF 195
           ++CIY F C F+       T H L C  F
Sbjct: 163 LLCIYHFFCAFII-----FTMHLLFCCAF 186


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +2

Query: 62  FICACMNVCMYLCKIKLYVYIFFCVY 139
           F C+ + +C+ + K+ L   ++F +Y
Sbjct: 257 FFCSLVALCLTMYKLSLTEDLYFAIY 282


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 133 CIFVT*YKFHCTYH 174
           C F+T YK H  YH
Sbjct: 236 CPFITEYKHHLEYH 249


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 464 KKTIYQSVRQHKKDERIFLGVSLRQNRPDRFYSCFTVC 577
           +K  Y      K    I +G  L+   PDRF   FT+C
Sbjct: 68  RKARYTEKGTCKMGREIEVGYDLKS--PDRFVRQFTIC 103


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 115  CIYIFLCIFVT*YKF 159
            C+Y+FLC F   Y+F
Sbjct: 1131 CVYLFLCGFCV-YEF 1144


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -2

Query: 210 LYQSTKGSAE*IVVGAMKFI----LSYKYTQKNIYTYNFILHKY 91
           LYQ  +  +  ++  A + +    L+Y  T+K +    F LHK+
Sbjct: 616 LYQIQEDGSRGVIAFASRSLRGPELNYTTTEKELLGVIFALHKF 659


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 112 ICIYIFLCIFVT*Y 153
           +C+Y+FL I +T Y
Sbjct: 291 LCLYLFLIITLTIY 304


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,997
Number of Sequences: 336
Number of extensions: 3228
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)