Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0729
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_7667| Best HMM Match : DUF827 (HMM E-Value=0.33)                    29   4.8  

>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -2

Query: 156 FILSYKYTQKNIYTYNFILHKYIHTFIHAHINIIVYTVLKGIYYYI 19
           +I +Y YT    YTY +  + Y +T+ + ++ + VY V   +Y Y+
Sbjct: 26  YIYTYTYTYTYTYTYTY-TYTYTYTYTYTYVYVYVY-VYVYVYVYV 69


>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 408 LAQFVTSLISCAITLGLNQKKPSIRVYGNIKRMNVFFSVYPCVRTXQTAFIAVLLFAI 581
           L Q  T   S   T    +KK +IR    IKR   ++ VY       T+ +A+LLF +
Sbjct: 164 LLQTYTLRSSAKATHSSPEKKSAIRYVIRIKRHVFYYIVYLLAPCLLTSLLAILLFTL 221


>SB_7667| Best HMM Match : DUF827 (HMM E-Value=0.33)
          Length = 806

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +2

Query: 455 IKPKKTIY-----QSVRQHKKDERIFLGVSLRQNRPDRFYSCFTVCNLT*SVK 598
           I+PK   Y     +  R+ ++ ER ++   L  +R +  Y C  VCNL  S+K
Sbjct: 277 IRPKAAWYTPEVSEEKRKRRRLERKWVSTGLPTDRANYAYQCGVVCNLIDSLK 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,802,063
Number of Sequences: 59808
Number of extensions: 349017
Number of successful extensions: 703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)