Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0729
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77661-9|CAI46604.1|  345|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z92833-1|CAE17827.1|  160|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF067945-13|AAC17676.2|  308|Caenorhabditis elegans Serpentine r...    28   5.6  
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      27   9.8  
AL023835-9|CAA19493.2|  397|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z77661-9|CAI46604.1|  345|Caenorhabditis elegans Hypothetical
           protein F40G12.15 protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 526 YTEKNTFILFMLPYTLIDGFFWFNPSVI 443
           + EK TFIL   P      F W+NP ++
Sbjct: 149 FDEKRTFILLTFPILYGIWFLWYNPPIV 176


>Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical
           protein F21H7.14 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 140 NIHKKIYIHIILFYINTYTHSYMHI 66
           N+H  IY++I  F +NT  H   HI
Sbjct: 208 NLHLVIYVYIPFFALNTLAHFLFHI 232


>Z92833-1|CAE17827.1|  160|Caenorhabditis elegans Hypothetical
           protein F38A6.4 protein.
          Length = 160

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 393 LGYYYLAQFVTSLISCAITLGLNQKKPSIRVYGNIK 500
           L +  L  FV+ L+S AI+  + +K PS+    N+K
Sbjct: 7   LSFRCLLIFVSGLVSVAISQSITEKTPSLNEIKNLK 42


>AF067945-13|AAC17676.2|  308|Caenorhabditis elegans Serpentine
           receptor, class x protein59 protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = -1

Query: 649 HQCENLIIIIAVCSPXEFNASS*IANSKTAIKAVWXVLTQGYTEKNTFILFMLPYTLIDG 470
           H   +L    AV +P  +       N+K  I  ++ +LT G++     +L  L Y L  G
Sbjct: 96  HLVISLNRFFAVWTPYRYKTMFSERNTKIIIFLIF-ILTLGFSFSFYEVLCSLEYNLKTG 154

Query: 469 FFWFNPSVIAQLI 431
           FF+F  + +   I
Sbjct: 155 FFFFTDTPLCNTI 167


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 410 RAVRHVSDQLRYHARIKPKKTIYQSVRQHK 499
           + + + SDQL+YH  +  + T  ++ R HK
Sbjct: 823 KCIFYTSDQLKYHTAVDVRSTRGKNARGHK 852


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 410 RAVRHVSDQLRYHARIKPKKTIYQSVRQHK 499
           + + + SDQL+YH  +  + T  ++ R HK
Sbjct: 823 KCIFYTSDQLKYHTAVDVRSTRGKNARGHK 852


>AL023835-9|CAA19493.2|  397|Caenorhabditis elegans Hypothetical
           protein Y37A1B.10 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 143 TNIHKKIYIHIILFYINTYTHSYMHI 66
           T +H K+Y     +YI+  TH Y H+
Sbjct: 96  TYLHNKMYEGYKCWYISRVTHGYFHV 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,257,263
Number of Sequences: 27780
Number of extensions: 278522
Number of successful extensions: 627
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)