Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0729
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38010.1 68415.m04665 ceramidase family protein contains Pfam...    31   0.73 
At1g57943.1 68414.m06569 purine permease-related low similarity ...    27   9.0  

>At2g38010.1 68415.m04665 ceramidase family protein contains Pfam
           domain, PF04734: Neutral/alkaline nonlysosomal
           ceramidase
          Length = 757

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +2

Query: 365 FSNGIRTRKSRLLLPRAVRH-VSDQLRYHARIKPKKTIYQSVRQHKKDERIFLGVSLRQN 541
           F NG +   S   +PR V   VSD  R   R+      Y+S R H  D+ + +   +R  
Sbjct: 253 FENGQKNSVSSRNIPRRVSTIVSDFSRNRDRLLDIAATYKSSRGHSVDKSLDVKTRVRNG 312

Query: 542 RPDRFYSCFTVCN 580
              +F S F   N
Sbjct: 313 SKRKFVSAFCQSN 325


>At1g57943.1 68414.m06569 purine permease-related low similarity to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 398

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +3

Query: 405 YLAQFVTSLISCAITLGLNQKKPSIRVYGNIKRMNVFFSVYPCVRTXQTAFIAVLLFA 578
           + A    SL  C I LG  + +   + YGN K   +   +  CV    +    V LFA
Sbjct: 222 FSATIAFSLSLCLIQLGFEKLQVKTKRYGNEKVFRMVLEMQICVAFVASVVCLVGLFA 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,934,027
Number of Sequences: 28952
Number of extensions: 236295
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)