Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0728
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   4.3  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    26   5.6  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   5.6  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   5.6  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   9.9  

>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 473 SYGNIRLSTTRSVKHLEILSKSVFKMHI 556
           +YG ++L+T +S K  E++ KS+ K  I
Sbjct: 513 AYGQVKLATYKSNKVHEVILKSISKSRI 540


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 188 PGFR*RASRL*ELHHLRFEESSHRATLLRTFMFMGFQVL 304
           P FR    ++ +   ++     +RAT+LR   F GFQ+L
Sbjct: 156 PSFRGAVKQIAKQEGMKTFFYGYRATILRDIPFSGFQLL 194


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -2

Query: 131 HHVVVHNSLPTYNCVLGEINLELNFNGVLVLALQ 30
           H  V+ NS+  ++  +    +ELN++ V V  L+
Sbjct: 239 HESVLRNSMDDFHTAISSSEIELNYSNVSVSTLK 272


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 404 FSGEKLTKKNNFLIFSTKIIVFFSYGNIRLSTT 502
           FS E L+KKN FLI   +    F   N+ +ST+
Sbjct: 833 FSFEPLSKKNRFLINLFRFSFSFILYNLLISTS 865


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 170 LAAGLQDPGHAEVHHVVVHNSLPTYNCVLGEINLELNFN 54
           LA  L    H  ++ +VVH + P  N +L   N+E  ++
Sbjct: 110 LAQSLAFLNHVGLYPIVVHGAGPQLNKILASRNVEPEYS 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,459
Number of Sequences: 5004
Number of extensions: 51582
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)