Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0728
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047     28   5.9  
03_01_0020 + 180963-181346,181432-181994,183000-183822                 28   7.7  
02_05_0792 - 31777775-31778220,31778506-31778630,31778724-317789...    28   7.7  

>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
          Length = 396

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = +2

Query: 59  N*VQDLSHREHSYTLGGCCAQQHDVPPRARGPAVRQQGQLHAAPG 193
           N  Q   H   S T       QH  PP A    VRQQ +  AA G
Sbjct: 307 NHAQPPHHDAGSKTAAAAKHSQHQPPPSAAAAVVRQQQEQAAAAG 351


>03_01_0020 + 180963-181346,181432-181994,183000-183822
          Length = 589

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 151 TPGTRRYIMLLCTTASQRITVFSVR*ILNSILTGCLSLRS 32
           T G R   M+LC   ++R+T   V   L + LTG + L S
Sbjct: 45  TGGWRSAAMILCVELNERLTTLGVAVNLVTYLTGTMHLGS 84


>02_05_0792 -
           31777775-31778220,31778506-31778630,31778724-31778911,
           31779716-31779892
          Length = 311

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 188 PGFR*RASRL*ELHHLRFEESSHRATLLRTFMFMGFQVL 304
           P F   AS    + H  FEESS R +++  +   GF  L
Sbjct: 97  PNFEILASLFPSIRHFAFEESSIRPSIISRYGIHGFPTL 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,395,066
Number of Sequences: 37544
Number of extensions: 326981
Number of successful extensions: 818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)