Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0728
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28686| Best HMM Match : zf-C2HC (HMM E-Value=4.7)                   28   6.0  
SB_24921| Best HMM Match : Pyr_redox (HMM E-Value=4.7e-15)             28   6.0  

>SB_28686| Best HMM Match : zf-C2HC (HMM E-Value=4.7)
          Length = 58

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 231 ICVLKSRPTALPCCAPSCSWDSKF 302
           I  ++ R T+  CC P C+ DS++
Sbjct: 10  ITAVRRRTTSFHCCVPRCTGDSRY 33


>SB_24921| Best HMM Match : Pyr_redox (HMM E-Value=4.7e-15)
          Length = 256

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
 Frame = +2

Query: 86  EHSYTLGGCCA-QQHD---VPPRAR 148
           +H Y +G CCA QQ D   VPPRA+
Sbjct: 222 DHIYVIGDCCACQQPDGSWVPPRAQ 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,300,951
Number of Sequences: 59808
Number of extensions: 386069
Number of successful extensions: 1025
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)