Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0728
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77667-1|CAB01236.2|  391|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell l...    29   3.9  
U18385-1|AAA62505.1|  276|Caenorhabditis elegans collagen protein.     29   3.9  
AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kina...    29   3.9  
L23648-8|AAA28030.1|  503|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z77667-1|CAB01236.2|  391|Caenorhabditis elegans Hypothetical
           protein M04B2.2 protein.
          Length = 391

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -1

Query: 537 DLERISKCLTERVVDNLMLPYEKNTIIFVEKMRK 436
           DLER+++ L  R +DNL + + + TI  + +M+K
Sbjct: 44  DLERVNETLQLRSIDNLYMVFYEETIEKLSEMQK 77


>U41031-1|AAA82618.2|  562|Caenorhabditis elegans Abnormal cell
           lineage protein 18 protein.
          Length = 562

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 248 TLQNADDATLTAETLFSEIQEQHEAVLAAGLQDPGHAEVH-HVVVHNSLPTYNCVLGEIN 72
           T+    D T  A+TL       H+ V  A       A +H + +VHN +   NC++ E+N
Sbjct: 375 TICRHGDKTKGAQTL-----RTHQLVSLATQVSSAVAHIHKYRIVHNDIAARNCLIAEVN 429


>U18385-1|AAA62505.1|  276|Caenorhabditis elegans collagen protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 338 NNPNYI-FLHYNMQ*NFIHKQSFFSGEKLTKKNNFLIFST 454
           N PN + FLH+ +  NF  K  +FS   L     FLI++T
Sbjct: 236 NIPNCVLFLHFFLNCNFTCKSKYFSFSNLANFFFFLIWNT 275


>AF133217-1|AAD24877.1|  583|Caenorhabditis elegans tyrosine kinase
           receptor-relatedprotein precursor RYK protein.
          Length = 583

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 248 TLQNADDATLTAETLFSEIQEQHEAVLAAGLQDPGHAEVH-HVVVHNSLPTYNCVLGEIN 72
           T+    D T  A+TL       H+ V  A       A +H + +VHN +   NC++ E+N
Sbjct: 396 TICRHGDKTKGAQTL-----RTHQLVSLATQVSSAVAHIHKYRIVHNDIAARNCLIAEVN 450


>L23648-8|AAA28030.1|  503|Caenorhabditis elegans Hypothetical
           protein F44B9.2 protein.
          Length = 503

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 45  KHPVKIEFKIYLTENTVIRWE-AVVHNNMMYLRVPGVLQSG 164
           ++  KIE   +L E T++R   ++ HN+ +YL V G + SG
Sbjct: 324 EYVAKIECPSWLAECTILRERLSIAHNDHLYLCVCGEIFSG 364


>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
            T08G11.1b protein.
          Length = 3185

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -2

Query: 182  HEAVLAAGLQDPGHAEVHHVVVHNSLPTYNCVLGEINLELNFNGVLVLALQDLIH 18
            HE  +  G+ D     ++HV +H  L  +N +  +IN+EL    VL   +  L++
Sbjct: 2112 HEEKIQDGIDDQT-TSIYHVHLHPPLEFHNNLPFDINIELPEQKVLGAGMSTLLN 2165


>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
            T08G11.1a protein.
          Length = 3212

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -2

Query: 182  HEAVLAAGLQDPGHAEVHHVVVHNSLPTYNCVLGEINLELNFNGVLVLALQDLIH 18
            HE  +  G+ D     ++HV +H  L  +N +  +IN+EL    VL   +  L++
Sbjct: 2112 HEEKIQDGIDDQT-TSIYHVHLHPPLEFHNNLPFDINIELPEQKVLGAGMSTLLN 2165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,541,342
Number of Sequences: 27780
Number of extensions: 301714
Number of successful extensions: 780
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)