Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0728
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.6  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   4.6  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   4.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   6.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.0  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   8.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   8.0  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/36 (22%), Positives = 24/36 (66%)
 Frame = -1

Query: 537 DLERISKCLTERVVDNLMLPYEKNTIIFVEKMRKLF 430
           +++R +KC+  +     M+ + K++ I +E+M++++
Sbjct: 470 NVQRAAKCIIGKDYSLPMVNHSKSSRINIERMKQVY 505


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 228 CNSYSRDALQRNPGAA*SCPCCR 160
           CNS  + ++    G +  C CCR
Sbjct: 73  CNSQVQPSVASTTGFSKECYCCR 95


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 228 CNSYSRDALQRNPGAA*SCPCCR 160
           CNS  + ++    G +  C CCR
Sbjct: 73  CNSQVQPSVASTTGFSKECYCCR 95


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 122 VVHNSLPTYNCVLGEINL 69
           +V  S+PTY C LG+  L
Sbjct: 649 LVATSMPTYICYLGKAYL 666


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 428 KNNFLIFSTKIIVFFSYGNIRLSTTR 505
           +N  L+   KI++   YG+I  S T+
Sbjct: 11  QNVVLVKKVKIVLLIFYGSIMFSMTQ 36


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/49 (22%), Positives = 20/49 (40%)
 Frame = -2

Query: 245 LQNADDATLTAETLFSEIQEQHEAVLAAGLQDPGHAEVHHVVVHNSLPT 99
           +Q A       +   + +Q+  +    A     GH + HH +  NS P+
Sbjct: 772 VQQAQQVQQQMQAAMAAVQQSQQRHQHAAQMIYGHQQSHHGLHINSSPS 820


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 188 EQHEAVLAAGLQDPGHAEVHHVVVHNSL 105
           E+H+ VL   ++  G+    +    NSL
Sbjct: 190 EEHDTVLVVNIEKSGNESKKYATSSNSL 217


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 253 PPRYPAAHLHVHGIPSSGSEFAADPTAHQQP 345
           P    AA L + G PS+  E   D    QQP
Sbjct: 844 PASSTAATLVLSGCPSNMMELQVDIADSQQP 874


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,500
Number of Sequences: 438
Number of extensions: 3411
Number of successful extensions: 31
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)