Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0728
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37160.1 68415.m04559 transducin family protein / WD-40 repea...    31   0.69 
At3g61810.1 68416.m06937 glycosyl hydrolase family 17 protein si...    30   1.6  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    27   8.5  

>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to Dystrophia myotonica-containing WD repeat
           motif protein  DMR-N9 protein  (DMWD) (DM9) (SP:Q08274)
           [Mus musculus]; simlar to DMR protein GI:18028289 [Homo
           sapiens];
          Length = 544

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
 Frame = +3

Query: 39  KDKHPVKIEFKIYLTENTVIRWEAV--VHNNMMYLRVPGVLQSGSKDSFMLLLDFAEERL 212
           +D     ++   Y   N V RW       N++ +      L +  +D ++ + DF+ ++L
Sbjct: 278 RDPTQFSVDKAKYSKSNPVARWHIGQGAINSIAFSNDGAYLATVGRDGYLRIFDFSTQKL 337

Query: 213 GCKSCIICVLKSRPTALPCCAPSCSWDSKFWL 308
                 +C +KS   AL CCA   S D K+ L
Sbjct: 338 ------VCGVKSYYGALLCCA--WSMDGKYLL 361


>At3g61810.1 68416.m06937 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase precursor GI:4097948 from
           [Oryza sativa]; contains Pfam profile PF00332: Glycosyl
           hydrolases family 17
          Length = 375

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -1

Query: 555 MCILNTDLERISKCLTER--VVDNLMLPYEKNTII 457
           +CI N  +  ++  L+E   ++ N +LPY KNTII
Sbjct: 106 LCIPNDKIPSLATNLSEAESIIRNFILPYHKNTII 140


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -1

Query: 273 RSRVARWDDSS---KRR*CNSYSRDALQR 196
           R R   WD++    K+R CN+Y RD   R
Sbjct: 157 RKRTRNWDEAGNNKKKRECNNYRRDGRDR 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,406,217
Number of Sequences: 28952
Number of extensions: 265436
Number of successful extensions: 634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)