Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0727
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68113-1|CAA92151.1|  321|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine rece...    27   9.7  

>Z68113-1|CAA92151.1|  321|Caenorhabditis elegans Hypothetical
           protein E03G2.1 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -2

Query: 553 FFFLFCSEICMXHVYMKLFDSYIFLIKQNYLILTKSYIVF 434
           F  LFC+ I + ++Y+ ++  YIF+ + +  I +K  I+F
Sbjct: 78  FLPLFCAYIYI-YIYIYVYGLYIFIAQSHKQIFSKFNIIF 116


>Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical
           protein F33E2.7 protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 63  DPYLDKHLVI*FVLKRDYSVKNLRPSASLCHNVLFCKLLRDDLP 194
           D  L KH    F +   Y + N  P+  +C +V  CK    D P
Sbjct: 23  DSDLGKHCFNFFQIACHYYITNTSPTDDMCSSVELCKPYNIDCP 66


>U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine
           receptor, class h protein187 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 345 PLLYHFVILVVTYYSDSQVSLC 410
           PLLY F+  V TYY+   ++ C
Sbjct: 261 PLLYAFISTVYTYYNQKMMNWC 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,144,436
Number of Sequences: 27780
Number of extensions: 262390
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)