Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0727
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   6.4  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 366 LQNGIAVDRTELQRNLFNNCKF 301
           L N  ++ +TEL + L N+C++
Sbjct: 2   LSNNSSMTQTELLQELTNDCRY 23


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 335 NCRGIYSIIVNFEQI 291
           NC+ +Y  I+N EQI
Sbjct: 350 NCKKLYYNIINIEQI 364


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 383 ISNH*DYKMV*QWIEQNCRGIYSIIVN 303
           +SN  D   V +W+E+N  G   I++N
Sbjct: 65  LSNQNDILKVIEWVEKNL-GAIDILIN 90


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 236 VIFFLYILPLD*DALFYSKFAQNLQLLNKFL 328
           +  + Y++PL    LFYS+   +++   K L
Sbjct: 224 IFIWAYVIPLIFIILFYSRLLSSIRNHEKML 254


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 236 VIFFLYILPLD*DALFYSKFAQNLQLLNKFL 328
           +  + Y++PL    LFYS+   +++   K L
Sbjct: 224 IFIWAYVIPLIFIILFYSRLLSSIRNHEKML 254


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +1

Query: 232 VGNFFFIYFTLRLRCIILFQICSKFTI 312
           +GNF+F++ +L+   +  FQ C+  ++
Sbjct: 100 LGNFYFVHESLKNVLLWDFQECTFISV 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,449
Number of Sequences: 438
Number of extensions: 3724
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)