Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0727
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   2.9  
At1g50430.1 68414.m05652 7-dehydrocholesterol reductase / 7-DHC ...    29   2.9  
At5g03610.1 68418.m00320 GDSL-motif lipase/hydrolase family prot...    27   9.0  
At3g19270.1 68416.m02444 cytochrome P450 family protein similar ...    27   9.0  

>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 279 YFIPNLLKIYNY*INSSAILFYPLLYHFVILVVTYYSDSQVSL 407
           +F+P LL ++ +      IL +PL   F++L+  Y + S V L
Sbjct: 48  FFLPPLLLLFIFVSRFLPILAFPLSTFFILLIYHYLTPSSVFL 90


>At1g50430.1 68414.m05652 7-dehydrocholesterol reductase / 7-DHC
           reductase / sterol delta-7-reductase (ST7R) / dwarf5
           protein (DWF5) identical to SP|Q9LDU6
           7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC
           reductase) (Sterol delta-7-reductase) (Dwarf5 protein)
           {Arabidopsis thaliana}
          Length = 432

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 85  KCLSKYGSL*KLYNLWLKYQIIP 17
           +C SKYG   KLY   +KY+IIP
Sbjct: 407 RCRSKYGKYWKLYCEKVKYRIIP 429


>At5g03610.1 68418.m00320 GDSL-motif lipase/hydrolase family protein
           low similarity to SP|P40602 Anther-specific proline-rich
           protein APG precursor {Arabidopsis thaliana}; contains
           Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase
          Length = 359

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 111 LFSKQTILPNVYPNMDLFKNYTTYG 37
           +F+ QT LPN+   +D+F+N  T G
Sbjct: 127 VFNTQTPLPNMTTQIDIFQNILTTG 151


>At3g19270.1 68416.m02444 cytochrome P450 family protein similar to
           Cytochrome P450 85 (SP:Q43147) {Lycopersicon
           esculentum};
          Length = 468

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 541 FCSEICMXHVYMKLFDSYIFLIKQNYLILTKSYIVFPIDI 422
           F  ++ +  ++  L  SY  ++K NY I+ K Y  FP+ +
Sbjct: 173 FAFDVGILAIFGHLESSYKEILKHNYNIVDKGYNSFPMSL 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,825,219
Number of Sequences: 28952
Number of extensions: 220386
Number of successful extensions: 388
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)