Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0726
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    24   1.3  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.4  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   7.2  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   9.5  

>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 468 ISVSVFFLILLYIKW*YVLLLANNV*RYADPIWDWFVHFT*STASQMISCILNCLRS 638
           I  ++++L+L  I   YVL L   V  +     D++  +T S        + NC  S
Sbjct: 95  IRKNLYYLLLFVINVLYVLTLCYAVYYWRQQYEDFWHRYTLSFIENYCQFLYNCFHS 151


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 95  NLRKLSTISKNNSDNSCTKKPQSATRSVQNP 3
           NL  L+  S  N D SCT        SV NP
Sbjct: 355 NLTNLTYPSYYNQDVSCTHYQNPEYISVVNP 385


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 95  NLRKLSTISKNNSDN 51
           N+R+LST ++N +D+
Sbjct: 121 NMRRLSTTTQNKNDD 135


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 126 LKHSDVLESHQVKSSVLLQNW 188
           L  +DV+E +  K+  ++Q W
Sbjct: 441 LTQADVIEKYLSKARYVIQTW 461


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,684
Number of Sequences: 336
Number of extensions: 3911
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)