Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0726
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1033 + 33642479-33642688,33643089-33643343,33643479-336436...    29   3.5  
04_04_0288 + 24164671-24165549,24166113-24166496                       28   8.0  

>02_05_1033 +
           33642479-33642688,33643089-33643343,33643479-33643603,
           33643827-33643908,33644008-33644076,33644102-33644341,
           33644431-33644496,33645087-33645155,33645229-33645366,
           33645681-33645754,33646146-33646255,33646428-33646525,
           33646595-33646633,33646771-33646890,33646984-33647109,
           33647321-33647382,33647467-33647518,33648182-33648436
          Length = 729

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 123 DLKHSDVLE-SHQVKSSVLLQNWTRPEEMWSESVNNAQS*YILSYNVMLTEILRRESITL 299
           D  HS  L+ SH +++   L + + P  + + S     S Y+  YNV+ T +L+RE I L
Sbjct: 511 DKAHSPGLQKSHSMQAISHLPSLSIPSSIEAASTIIGGSLYMQLYNVLQTNMLQREQI-L 569

Query: 300 TAAGQH*NCVCADT 341
            A  Q   C  A T
Sbjct: 570 HAMKQLSGCDMAMT 583


>04_04_0288 + 24164671-24165549,24166113-24166496
          Length = 420

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +3

Query: 30  LWFFSARIVRIVFGYR**FSQVDTLHNEDYTDLKHSDVLESHQVKSSVLLQNWTRPEEMW 209
           +WF+S R   +VFG+     +++  H      L HS VL     + S LL N T   E+W
Sbjct: 236 VWFWSPRQYPLVFGHAPRLQRLELTH----AGLVHSKVL-----RLSKLLDNCTSLRELW 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,747,376
Number of Sequences: 37544
Number of extensions: 338439
Number of successful extensions: 634
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)