Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0726
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)                       28   6.2  

>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1020

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 333 ADTLRTTDCEICADGYIPQSEYPMLTLI--RFQFYLYYYKVTNNIWSISVSVF--FLILL 500
           +DT   T+CE C   + P SE      +  R+  +   + V   +WSI   +     IL+
Sbjct: 539 SDTSNATNCEDCPSSHFPNSEKTRCVFVPLRYLNWRSPWSVVIVVWSILAFLLTNLTILM 598

Query: 501 YIK 509
           +IK
Sbjct: 599 FIK 601


>SB_51028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -2

Query: 156 DVIQEHHYVSNQYNLHCGGYQ 94
           +V+QE    SNQYNLH  GYQ
Sbjct: 289 EVVQER---SNQYNLHTNGYQ 306


>SB_51502| Best HMM Match : TPR_2 (HMM E-Value=0)
          Length = 1161

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 462 ICYL*LCNNINKIENVLTSASDIQIEGYN 376
           ICY  +  N+ K+E+V T+  D  IE Y+
Sbjct: 600 ICYEQIFTNLGKLEDVKTNIVDTYIEAYH 628


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,371,032
Number of Sequences: 59808
Number of extensions: 436845
Number of successful extensions: 1066
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)