Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0726
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z73973-5|CAA98267.2|  882|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    29   4.1  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    29   4.1  
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    28   7.2  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     28   7.2  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     28   7.2  
Z49912-2|CAA90138.1|  149|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U28741-1|AAA68325.2|  256|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 324  CVCADTLRTTDCEICADGY 380
            C C + +  T CE CADGY
Sbjct: 1056 CECRENVEGTMCEKCADGY 1074


>Z73973-5|CAA98267.2|  882|Caenorhabditis elegans Hypothetical
           protein F25D1.4 protein.
          Length = 882

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 363 ICADGYIPQSEYPMLTLIRFQFYLYYYKVTNNIWSISVSVFFLI 494
           + A  Y P  +Y ++ L+  +FY  ++K    +   S ++F L+
Sbjct: 799 LMAQSYSPTPQYDVVNLLHIKFYFAHFKQETILQERSYNLFLLL 842


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
            protein T22A3.8 protein.
          Length = 3102

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 324  CVCADTLRTTDCEICADGY 380
            C C + +  T CE CADGY
Sbjct: 1056 CECRENVEGTMCEKCADGY 1074


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3102

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 324  CVCADTLRTTDCEICADGY 380
            C C + +  T CE CADGY
Sbjct: 1056 CECRENVEGTMCEKCADGY 1074


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 324 CVCADTLRTTDCEICADG--YIPQSEYP 401
           C C D  R  DC + AD   ++PQ++ P
Sbjct: 430 CYCMDGWRGNDCSVFADAIVHVPQAQSP 457


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 324 CVCADTLRTTDCEICADG--YIPQSEYP 401
           C C D  R  DC + AD   ++PQ++ P
Sbjct: 372 CYCMDGWRGNDCSVFADAIVHVPQAQSP 399


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +3

Query: 324 CVCADTLRTTDCEICADG--YIPQSEYP 401
           C C D  R  DC + AD   ++PQ++ P
Sbjct: 554 CYCMDGWRGNDCSVFADAIVHVPQAQSP 581


>Z49912-2|CAA90138.1|  149|Caenorhabditis elegans Hypothetical
           protein T24F1.4 protein.
          Length = 149

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +1

Query: 223 ITHSHNIYS--LIT*CSPKY*DENPLRSPQLGSIETVFVPIRYVPRTVKYVLTVISL 387
           + + HN YS      C P Y  E+  R P  G       PIR  P  +K +L  I++
Sbjct: 55  LCNCHNYYSPPFCISCLPGYWGESCDRQPLKGVTSASDFPIRIPPILIKPILIAIAI 111


>U28741-1|AAA68325.2|  256|Caenorhabditis elegans Hypothetical
           protein F35D2.3 protein.
          Length = 256

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 312 QH*NCVCADTLRTTDCEICADGYIPQSEY 398
           Q   C C        CE CA GYI +++Y
Sbjct: 157 QENECACTAGYTGDHCEQCAIGYIKEAQY 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,183,413
Number of Sequences: 27780
Number of extensions: 332262
Number of successful extensions: 928
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)