Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0726
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31770.1 68414.m03899 ABC transporter family protein contains...    29   3.8  

>At1g31770.1 68414.m03899 ABC transporter family protein contains
           Pfam profile: PF00005: ABC transporter
          Length = 648

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +3

Query: 207 WSESVNNAQS*YILSYNVMLTEILRRESITLTAAGQH*NCVCADTLR--TTDCEICADGY 380
           W   +    + +ILS  V+L  +L  + + L       N   A TL   TT   + A GY
Sbjct: 501 WMGGLKPDPTTFILSLLVVLYSVLVAQGLGLAFGALLMNIKQATTLASVTTLVFLIAGGY 560

Query: 381 IPQSEYPMLTLIRFQFYLYY-YKV 449
             Q   P +  +++  Y YY YK+
Sbjct: 561 YVQQIPPFIVWLKYLSYSYYCYKL 584


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,984,414
Number of Sequences: 28952
Number of extensions: 296565
Number of successful extensions: 642
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)