Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0725
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.6  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    21   7.4  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   9.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/38 (21%), Positives = 18/38 (47%)
 Frame = +1

Query: 415  FNRKIEQCNEEHIEIAKKKNQGYPPCNIAWSEKRVPKY 528
            +N++ + C+       ++K  G+ P   +W +   P Y
Sbjct: 1137 WNKERKICDWPKSAKCEEKKPGHKPSTSSWQKPTKPSY 1174


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 625 QYREHHTALLKEYQYCGKYFNCL 693
           QY +   A LK  +    YF CL
Sbjct: 23  QYNDELDAALKSERLMKSYFECL 45


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 118 CEIVLSSFGYDLR 156
           C I + SFGY +R
Sbjct: 181 CHIEIESFGYTMR 193


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,779
Number of Sequences: 336
Number of extensions: 4011
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)