Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0725
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    58   1e-09
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    31   0.21 
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    28   1.5  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    27   2.6  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    27   2.6  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    26   6.0  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    26   6.0  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   6.0  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   7.9  

>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 26/58 (44%), Positives = 34/58 (58%)
 Frame = +2

Query: 77  FTYDELARYNGIENAKLYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLITGDF 250
           +T  EL  YNG +N+ ++LA+ GT+Y+VT G K Y     Y  F G D SRGL    F
Sbjct: 43  YTPAELKEYNGSKNSLVFLAIKGTVYNVTMGSKFYGPQGPYSAFAGHDASRGLAKNSF 100



 Score = 28.7 bits (61), Expect = 0.85
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 253 SETKXKDHVLDLKCSDLSALLHWKQTFKQKYTEIGLL 363
           S+ +  D   DL   +  AL  WK  F QKY  +G L
Sbjct: 108 SDAEELDDCSDLNDEERQALNDWKAFFDQKYQAVGRL 144


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 19/82 (23%), Positives = 32/82 (39%)
 Frame = +1

Query: 322 KQTFKQKYTEIGLLKGRYYDSQGRETPYLEXFNRKIEQCNEEHIEIAKKKNQGYPPCNIA 501
           K  F + +  + LL    +              + IEQ  EE  E++K     + P NI 
Sbjct: 455 KNNFLETFKNVMLLPVSLFTIPSENNSASNLAEKAIEQKEEEDPELSKLDAARFVPANIY 514

Query: 502 WSEKRVPKYGVLEIVVDSTILD 567
            S+ R+      E+   + +LD
Sbjct: 515 VSKDRLKHLPTTELAAQAAVLD 536


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 316 HWKQTFKQKYTEIGLLKGRY 375
           HW   F+  Y ++GLL+ RY
Sbjct: 658 HWGHDFRPDYKQLGLLRDRY 677


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 587 YSPGEDTPSCVCVNTEN 637
           Y PG+  P+CVC+N ++
Sbjct: 382 YLPGQKLPNCVCLNEDH 398


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 364 KGRYYDSQGRETPYLEXFNRKIEQCNEEHIEIAKKKNQ 477
           +  Y    G E  YLE   R ++ CN + I+IA+ + +
Sbjct: 71  RASYSHDYGYEWDYLEDLERHVDDCN-KRIDIAEARRE 107


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 367 LSTNQFLYIFV*KFVSSAIVQTNHYIL 287
           LS   F+Y+   +F S+ +V+TN Y++
Sbjct: 469 LSLFLFMYVMYDQFTSNRVVKTNPYLI 495


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 457 IAKKKNQGYPPCNIAWSEKRVPKYGVLEIVVDST 558
           IA K+N+  P     + +  + KYG  +  VD+T
Sbjct: 222 IAAKENESLPDYAQRYKQAIIEKYGEFDFAVDAT 255


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 349  EIGLLKGRYYDSQGRETPYLEXFNRKIEQCNEEHIEIAKKKNQG 480
            +I LL+ R       ET     F   IE C + +  ++ KKN G
Sbjct: 1312 DIDLLRRRLCAKSDDETSSSSSFATDIEMCEQCNDPLSSKKNSG 1355


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 6/22 (27%), Positives = 16/22 (72%)
 Frame = +1

Query: 487 PCNIAWSEKRVPKYGVLEIVVD 552
           P ++ W EK++ ++G ++ ++D
Sbjct: 491 PVSLVWLEKKITEWGCMQALID 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,253
Number of Sequences: 5004
Number of extensions: 61337
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)