Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0725
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0079 + 5485090-5485238,5486066-5486137,5486764-5486840,548... 49 3e-06
10_08_0544 - 18655186-18655567,18656835-18657151 48 1e-05
02_05_0089 - 25715637-25716333,25716481-25717238 47 1e-05
10_08_0543 - 18649894-18650233,18651446-18651981 47 2e-05
03_02_0826 + 11569961-11570301,11572220-11572454 47 2e-05
02_05_1047 + 33745656-33745964 46 4e-05
05_07_0337 - 29368823-29368863,29369011-29369104,29369231-293693... 34 0.13
01_05_0334 - 21068575-21068642,21068723-21068813,21068955-210690... 28 6.2
06_01_0037 - 369498-369568,369668-369760,369889-369991,370061-37... 28 8.3
>03_02_0079 +
5485090-5485238,5486066-5486137,5486764-5486840,
5486946-5486989,5487583-5487639,5487640-5487686,
5488010-5488184,5489501-5489662,5489845-5489883
Length = 273
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/71 (28%), Positives = 40/71 (56%)
Frame = +1
Query: 301 LSALLHWKQTFKQKYTEIGLLKGRYYDSQGRETPYLEXFNRKIEQCNEEHIEIAKKKNQG 480
+++++ W++ + ++Y G + GRYYD +G T YL+ K ++ + +E K +
Sbjct: 134 VNSIVDWRKFYFERYIFAGKIVGRYYDDEGNPTKYLKGIEMKAKR-GAQLLEKQKSEEAK 192
Query: 481 YPPCNIAWSEK 513
P CN WS++
Sbjct: 193 IPNCNSKWSQQ 203
Score = 35.5 bits (78), Expect = 0.041
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 140 LGTIYDVTKGEKHYAKGATYHYFVG 214
L +++DVTKG+ +Y G YH+F G
Sbjct: 49 LSSVFDVTKGKSNYGPGGGYHHFAG 73
>10_08_0544 - 18655186-18655567,18656835-18657151
Length = 232
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 86 DELARYNGIENAK-LYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLITGDF 250
+EL +Y+G + K L +A+ G IYDVT+ Y G Y F GKD SR L F
Sbjct: 77 EELRQYDGSDPKKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSF 132
>02_05_0089 - 25715637-25716333,25716481-25717238
Length = 484
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 80 TYDELARYNGIE-NAKLYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLITGDFRV 256
T +EL Y+G + N L +A+ G IYDVT+ Y G Y F G+D SR L F +
Sbjct: 222 TEEELRVYDGSDPNKPLLMAIKGQIYDVTQSRMFYGPGGPYALFAGRDASRALAKMSFEL 281
>10_08_0543 - 18649894-18650233,18651446-18651981
Length = 291
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 80 TYDELARYNGIENAK-LYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLITGDF 250
T +EL +Y+G + K L +A+ G IYDV++ Y G Y F GKD SR L F
Sbjct: 148 TAEELLQYDGSDPEKPLLMAIKGQIYDVSQSRLFYGPGGPYALFAGKDASRALAKMSF 205
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 271 DHVLDLKCSDLSALLHWKQTFKQKYTEIGLLKGRYYDSQGRET 399
D + L +LSAL W+ F KY ++G +K + G T
Sbjct: 212 DDISGLSLLELSALQDWEYKFSSKYVKVGTIKKVLVEQGGDST 254
>03_02_0826 + 11569961-11570301,11572220-11572454
Length = 191
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 80 TYDELARYNGIENAK-LYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLITGDF 250
T ++LA Y+G + AK + +A+ G +YDVT+G Y Y F G+D +R L F
Sbjct: 83 TLEQLAAYDGKDPAKPILIAIRGQVYDVTRGRLFYGPQGPYSLFAGRDATRALALMSF 140
>02_05_1047 + 33745656-33745964
Length = 102
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 80 TYDELARYNGIENAK-LYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGL 235
T +L Y+G + +K +Y++V G +YDVT G Y G Y F G++ SR L
Sbjct: 6 TAAQLRAYDGSDPSKPIYVSVRGKVYDVTSGRGFYGPGGAYAVFAGREASRAL 58
>05_07_0337 -
29368823-29368863,29369011-29369104,29369231-29369347,
29369751-29369804,29369910-29370026,29370170-29370310,
29370402-29370820,29370906-29370934,29371287-29371354,
29371833-29371907
Length = 384
Score = 33.9 bits (74), Expect = 0.13
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 101 YNGIENAKLYLAVLGTIYDVTKGEKHYAKG 190
+N +E L+LA+L T + + +GE HY KG
Sbjct: 320 FNLLETGSLFLAILVTAFTLQEGESHYLKG 349
>01_05_0334 -
21068575-21068642,21068723-21068813,21068955-21069071,
21069166-21069219,21069334-21070004,21070445-21070473,
21070576-21070643,21072382-21072621
Length = 445
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 110 IENAKLYLAVLGTIYDVTKGEKHYAKG 190
+E L++AVL T + + G HY KG
Sbjct: 376 LETGSLFMAVLVTAFTLQDGTSHYLKG 402
>06_01_0037 -
369498-369568,369668-369760,369889-369991,370061-370156,
370227-370293,370379-370446,370606-370681,370890-370975,
371065-371150,371337-371409,371490-371735,371845-371937,
372045-372119,372496-372540,372631-372708,372805-372921,
373865-373894
Length = 500
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/80 (23%), Positives = 30/80 (37%)
Frame = +1
Query: 310 LLHWKQTFKQKYTEIGLLKGRYYDSQGRETPYLEXFNRKIEQCNEEHIEIAKKKNQGYPP 489
LLH KQT Y + + + P + K N+ I+ A + P
Sbjct: 287 LLHSKQTIPHYYLTVDTRVDKLIKLRSELNPLQDTSGGKKISINDLVIKAAALALRNVPE 346
Query: 490 CNIAWSEKRVPKYGVLEIVV 549
CN +W + +Y + I V
Sbjct: 347 CNSSWMNDFIRQYHNVNINV 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,673,174
Number of Sequences: 37544
Number of extensions: 358027
Number of successful extensions: 767
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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