Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0725
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)                58   5e-09
SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   7e-09
SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   9e-05
SB_38621| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)                   29   3.6  
SB_35861| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_48573| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_34186| Best HMM Match : Cyt-b5 (HMM E-Value=2.6e-13)
          Length = 310

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
 Frame = +2

Query: 86  DELARYNGIE-NAKLYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLITGDF 250
           ++LA+++G + +A +Y+A+LG +YDV KG + Y  G  YH F G+D +   +TG F
Sbjct: 91  EDLAKHDGSQPDANIYIAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVTGMF 146



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 27/83 (32%), Positives = 46/83 (55%)
 Frame = +1

Query: 262 KXKDHVLDLKCSDLSALLHWKQTFKQKYTEIGLLKGRYYDSQGRETPYLEXFNRKIEQCN 441
           K  D   +LK  DL  +  W + +++ Y  +G + GRYYD+QG+ T  L+    K+++  
Sbjct: 150 KATDDCSNLKNEDLLGIKGWMEFYQKDYKYVGKVVGRYYDAQGKPTAALKEARHKMKE-G 208

Query: 442 EEHIEIAKKKNQGYPPCNIAWSE 510
           E   E  K+++  +P CN  WS+
Sbjct: 209 ERERERQKQEDVKFPGCNSKWSQ 231



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +2

Query: 551 IARSWIGVPRQMYSPGEDTPSCVCVNT 631
           I R W GVPR ++ PG   P CVCV T
Sbjct: 246 IQREWAGVPRMLFKPGAKQPRCVCVRT 272


>SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 25/55 (45%), Positives = 35/55 (63%)
 Frame = +2

Query: 77  FTYDELARYNGIENAKLYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLIT 241
           FT DEL  Y+G+++  + +AV G ++DVT+G+  Y  G  Y  F G D SRGL T
Sbjct: 61  FTLDELKEYDGLKSPYVLMAVNGKVFDVTRGKDFYGPGGPYSNFAGHDASRGLAT 115


>SB_42543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
 Frame = +2

Query: 89  ELARYNGIE-NAKLYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLIT 241
           +L +++G++ +A +Y+A+LG +YDV KG + Y  G  YH F G+D +   +T
Sbjct: 276 DLVKHDGLQPDANIYIAILGKVYDVEKGRRFYGPGTGYHVFAGRDSTPSFVT 327


>SB_10760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = +2

Query: 77  FTYDELARYNGIE-NAKLYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGL 235
           FT DELA +NG   N+ +Y+AV G ++DV+  +  Y  G +Y+   GK+ SR +
Sbjct: 48  FTKDELATFNGRNSNSPIYVAVKGVVFDVSTSKDLYGYGESYNSMAGKECSRAI 101


>SB_8772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +2

Query: 77  FTYDELARYNGIENAKLYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLIT 241
           FT  EL  Y+G+    +Y+AV G ++DVT    ++          GKD SR L+T
Sbjct: 74  FTVRELKGYDGVNKELIYVAVNGKVFDVTSAWNYFGPAGPDCLLAGKDASRALVT 128


>SB_38621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = +1

Query: 340 KYTEIGLLKGRYYDSQGRETPYLEXFNRKIEQCNEEHIEIAKKKNQGYPPCNIAWSEKRV 519
           ++TE GL+ G     +G+   Y    N  +   +   I     +   Y PCNI      +
Sbjct: 317 RFTEDGLVTGLSRTDRGKSDLYFHSPNLGVRLLSSLIILKTLSQAPVYAPCNINTITDNL 376

Query: 520 PKYGVLEIVVDSTILD 567
            KYG+   VV S  +D
Sbjct: 377 MKYGIPYSVVYSLSVD 392


>SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 596

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = +1

Query: 277 VLDLKCSDLSALLHWKQTFKQKYTEIGLLKGRYYDSQGRETPYLEXFNRKIEQCNEEHIE 456
           V+DL   DLS L  W    K K  E+    G +   QG+    L  +NR ++  +   I+
Sbjct: 444 VMDLLGEDLSGLHVWLPASKGKGLEV---HGTFAQRQGQIYMDLTVYNRAMQAMSGFAIQ 500

Query: 457 IAKKKNQGYP 486
             K +   YP
Sbjct: 501 FNKNRFSHYP 510


>SB_35861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 614 KMEYLHQESTFDEELQSKIVLSTTISXTPYFGTL 513
           +++YL++  T +E+L  +IVLS ++    YF  +
Sbjct: 148 EIKYLNKNFTLNEQLTKQIVLSQSVKERAYFSMI 181


>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 527 YFGTLF-SLQAILHGGYPWFFFLAISMCSSLHCSIFL 420
           YFG +F  L  ++ G Y +F  L +++C SL   +F+
Sbjct: 44  YFGQVFLQLLILITGNYNFFNLLTMTLCISLLDDVFI 80


>SB_48573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 349 EIGLLKGRYYDSQGRETPYLEXFNR-KIEQCNEEHIEIAKKKNQGYPPCN 495
           E G  K  YY+ +GR+T + +   R K+E  +E H + A  K + Y  CN
Sbjct: 93  EQGYRKNPYYEVRGRQTDHEKVRPRVKLEVPHESHDDHAVAKRRHY--CN 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,392,598
Number of Sequences: 59808
Number of extensions: 444444
Number of successful extensions: 1230
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)