Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0725
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL024499-6|CAA19709.1| 326|Caenorhabditis elegans Hypothetical ... 59 3e-09
U41552-5|AAP82646.1| 183|Caenorhabditis elegans Vema (mammalian... 52 4e-07
U41552-4|AAD31555.1| 198|Caenorhabditis elegans Vema (mammalian... 52 4e-07
U46669-6|AAM51526.1| 514|Caenorhabditis elegans Hypothetical pr... 30 1.8
U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical pr... 30 1.8
U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical pr... 30 1.8
U23175-3|AAC46712.2| 959|Caenorhabditis elegans Anion/bicarbona... 30 1.8
U23175-2|AAM98009.1| 797|Caenorhabditis elegans Anion/bicarbona... 30 1.8
U23175-1|AAZ91355.1| 826|Caenorhabditis elegans Anion/bicarbona... 30 1.8
AY887905-1|AAX34417.1| 959|Caenorhabditis elegans anion transpo... 30 1.8
AF016685-16|AAG24152.2| 328|Caenorhabditis elegans Serpentine r... 29 4.3
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st... 27 9.8
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st... 27 9.8
>AL024499-6|CAA19709.1| 326|Caenorhabditis elegans Hypothetical
protein H38K22.3 protein.
Length = 326
Score = 59.3 bits (137), Expect = 3e-09
Identities = 24/60 (40%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Frame = +2
Query: 77 FTYDELARYNGIENAK-LYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLITGDFR 253
FT ++L ++G ++K +YLA+LG +Y+V +++Y G +YH+F G+D +R TGDF+
Sbjct: 101 FTPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTGDFQ 160
Score = 45.2 bits (102), Expect = 5e-05
Identities = 20/75 (26%), Positives = 42/75 (56%)
Frame = +1
Query: 286 LKCSDLSALLHWKQTFKQKYTEIGLLKGRYYDSQGRETPYLEXFNRKIEQCNEEHIEIAK 465
L +L ++ W + ++Y +G++ YYDS+G+ TP L ++E+ N E+ +
Sbjct: 171 LSHDELLSIRDWVSFYDKEYPLVGVVADLYYDSEGQPTPELTDVLARVEKAN-EYRKAQA 229
Query: 466 KKNQGYPPCNIAWSE 510
+ + +PPCN +++
Sbjct: 230 VEIEVFPPCNSEYNQ 244
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 551 IARSWIGVPRQMYSPGEDTPSCVCV 625
+ R W GVPR++ P + C CV
Sbjct: 258 VERQWAGVPRKLIEPTTEKFRCACV 282
>U41552-5|AAP82646.1| 183|Caenorhabditis elegans Vema (mammalian
ventral midlineantigen) related protein 1, isoform b
protein.
Length = 183
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +2
Query: 80 TYDELARYNGIENAKLYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLITGD 247
T +EL +Y+G++N + + GTIYDVT+G+ Y G Y G D +R L T D
Sbjct: 51 TVEELRKYDGVKNEHILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMD 106
>U41552-4|AAD31555.1| 198|Caenorhabditis elegans Vema (mammalian
ventral midlineantigen) related protein 1, isoform a
protein.
Length = 198
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +2
Query: 80 TYDELARYNGIENAKLYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLITGD 247
T +EL +Y+G++N + + GTIYDVT+G+ Y G Y G D +R L T D
Sbjct: 66 TVEELRKYDGVKNEHILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMD 121
>U46669-6|AAM51526.1| 514|Caenorhabditis elegans Hypothetical
protein C41G11.4b protein.
Length = 514
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 463 KKKNQGYPPCNIAWSEKRVPKYGVLEIV 546
K QGYP C W+E RV Y LE++
Sbjct: 168 KTTPQGYPQCISIWTEHRVDFYDRLELL 195
>U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical
protein C41G11.4a protein.
Length = 493
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 463 KKKNQGYPPCNIAWSEKRVPKYGVLEIV 546
K QGYP C W+E RV Y LE++
Sbjct: 168 KTTPQGYPQCISIWTEHRVDFYDRLELL 195
>U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical
protein C41G11.4c protein.
Length = 557
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 463 KKKNQGYPPCNIAWSEKRVPKYGVLEIV 546
K QGYP C W+E RV Y LE++
Sbjct: 168 KTTPQGYPQCISIWTEHRVDFYDRLELL 195
>U23175-3|AAC46712.2| 959|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 3, isoform a protein.
Length = 959
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -3
Query: 569 QSKIVLSTTISXTPYFGTLFSLQAILHGGYPWFFFLAISMCSSLHCSIFLLKXS 408
Q I+L TT+ Y +F + L GY FLA+ C L C +FL+ S
Sbjct: 501 QPMIILLTTVPLAIYIKVIFKISQEL--GYD---FLAMYACVGLFCQMFLILYS 549
>U23175-2|AAM98009.1| 797|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 3, isoform b protein.
Length = 797
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -3
Query: 569 QSKIVLSTTISXTPYFGTLFSLQAILHGGYPWFFFLAISMCSSLHCSIFLLKXS 408
Q I+L TT+ Y +F + L GY FLA+ C L C +FL+ S
Sbjct: 339 QPMIILLTTVPLAIYIKVIFKISQEL--GYD---FLAMYACVGLFCQMFLILYS 387
>U23175-1|AAZ91355.1| 826|Caenorhabditis elegans Anion/bicarbonate
transporter familyprotein 3, isoform c protein.
Length = 826
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -3
Query: 569 QSKIVLSTTISXTPYFGTLFSLQAILHGGYPWFFFLAISMCSSLHCSIFLLKXS 408
Q I+L TT+ Y +F + L GY FLA+ C L C +FL+ S
Sbjct: 368 QPMIILLTTVPLAIYIKVIFKISQEL--GYD---FLAMYACVGLFCQMFLILYS 416
>AY887905-1|AAX34417.1| 959|Caenorhabditis elegans anion
transporter ABTS-3 protein.
Length = 959
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -3
Query: 569 QSKIVLSTTISXTPYFGTLFSLQAILHGGYPWFFFLAISMCSSLHCSIFLLKXS 408
Q I+L TT+ Y +F + L GY FLA+ C L C +FL+ S
Sbjct: 501 QPMIILLTTVPLAIYIKVIFKISQEL--GYD---FLAMYACVGLFCQMFLILYS 549
>AF016685-16|AAG24152.2| 328|Caenorhabditis elegans Serpentine
receptor, class x protein1 protein.
Length = 328
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -1
Query: 511 SHSKQYCMVDIPGFFSWLFLCVLHYIVLFFY*XSLNKEFLFLDCHNIXLSTNQFLYI 341
S++ Q+C++ + FSW+ V I F + L CH S N F+YI
Sbjct: 227 SYAMQFCLISMFYTFSWIMFRVFPII---FVGRHIEWFILTSMCHVFNCSANAFVYI 280
>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
a protein.
Length = 1613
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +1
Query: 373 YYDSQGRETPYLEXFNR----KIEQCNEEHIEIAKKKN 474
+Y S ET +E F+R K E+C E +++KKN
Sbjct: 1451 FYTSDNTETEDIEEFHRSYLLKNEECEAEEERLSEKKN 1488
>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 1 protein.
Length = 1616
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +1
Query: 373 YYDSQGRETPYLEXFNR----KIEQCNEEHIEIAKKKN 474
+Y S ET +E F+R K E+C E +++KKN
Sbjct: 1453 FYTSDNTETKDIEEFHRSYLLKNEECEAEEERLSEKKN 1490
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,037,623
Number of Sequences: 27780
Number of extensions: 348266
Number of successful extensions: 818
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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