Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0725
(703 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein... 65 4e-11
At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein... 58 7e-09
At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein... 47 1e-05
At5g52240.1 68418.m06484 cytochrome b5 domain-containing protein... 47 1e-05
At3g61270.1 68416.m06857 expressed protein 30 1.7
At3g22000.1 68416.m02776 receptor-like protein kinase-related co... 30 1.7
At4g20680.1 68417.m03006 receptor-like protein kinase-related co... 29 2.3
At1g15980.1 68414.m01917 expressed protein 29 2.3
At3g61170.1 68416.m06846 pentatricopeptide (PPR) repeat-containi... 29 3.9
At3g50910.1 68416.m05574 expressed protein 29 3.9
At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger) fa... 28 6.9
At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger) fa... 28 6.9
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin... 27 9.1
>At4g14965.1 68417.m02300 cytochrome b5 domain-containing protein
similar to SP|O15173 Membrane associated progesterone
receptor component 2 (Steroid receptor protein DG6)
{Homo sapiens}; contains Pfam profile PF00173:
Heme/Steroid binding domain
Length = 245
Score = 65.3 bits (152), Expect = 4e-11
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 1/59 (1%)
Frame = +2
Query: 77 FTYDELARYNGI-ENAKLYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLITGDF 250
F+ +ELA YNG E + L +LG+++DVTKG+ HY G Y++F G+D SR ++G+F
Sbjct: 42 FSAEELALYNGTDETLPILLGILGSVFDVTKGKFHYGSGGGYNHFAGRDASRAFVSGNF 100
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/80 (31%), Positives = 42/80 (52%)
Frame = +1
Query: 271 DHVLDLKCSDLSALLHWKQTFKQKYTEIGLLKGRYYDSQGRETPYLEXFNRKIEQCNEEH 450
D + L S++ +++ W+ + + YT +G L GRYYDSQG T +L+ K + +
Sbjct: 107 DSLQGLSSSEVKSIVDWRGFYSRTYTPVGKLVGRYYDSQGNPTKHLKGAEAKASR-GAQL 165
Query: 451 IEIAKKKNQGYPPCNIAWSE 510
+E K + CN WS+
Sbjct: 166 MEKQKTEEAKQSNCNSRWSQ 185
>At2g24940.1 68415.m02982 cytochrome b5 domain-containing protein
similar to SP|P70580 Membrane associated progesterone
receptor component 1 {Rattus norvegicus}; contains Pfam
profile PF00173: Heme/Steroid binding domain
Length = 100
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Frame = +2
Query: 77 FTYDELARYNGIENAK-LYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGL 235
FT ++L++YNG + +K +Y+A+ G ++DVT G+ Y G Y F GKD SR L
Sbjct: 3 FTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRAL 56
>At3g48890.1 68416.m05341 cytochrome b5 domain-containing protein
similar to SP|O00264 Membrane associated progesterone
receptor component (mPR) {Homo sapiens}; contains Pfam
profile PF00173: Heme/Steroid binding domain
Length = 233
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 80 TYDELARYNGIENAK-LYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLITGDF 250
T +EL Y+G ++ K L +A+ G IYDV++ Y G Y F GKD SR L F
Sbjct: 72 TEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSF 129
>At5g52240.1 68418.m06484 cytochrome b5 domain-containing protein
similar to SP|P70580 Membrane associated progesterone
receptor component 1 {Rattus norvegicus}; contains Pfam
profile PF00173: Heme/Steroid binding domain
Length = 220
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 80 TYDELARYNGIENAK-LYLAVLGTIYDVTKGEKHYAKGATYHYFVGKDGSRGLITGDFRV 256
T +EL +Y+G + K L +A+ IYDVT+ Y G Y F GKD SR L F
Sbjct: 76 TEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEE 135
Query: 257 K 259
K
Sbjct: 136 K 136
>At3g61270.1 68416.m06857 expressed protein
Length = 498
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 283 DLKCSDLSALLHWKQTFKQKYTEIGLLKGRY 375
D KC+ L +HW T + K EIG + R+
Sbjct: 359 DSKCTSLKFAVHWGNTHEDKAREIGEVGSRF 389
>At3g22000.1 68416.m02776 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function that is usually associated with protein kinase
domain Pfam:PF00069; similar to receptor-like protein
kinase 5 (GI:13506747){Arabidopsis thaliana}
Length = 273
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 170 EKHYAKGATYHYFVGKDGSRGLITGDFRVKLKXRTMFLT*NVVICLHYCTGNKLLNK 340
E Y G+ Y Y + D R L G+FR T L N V L+ C+G+ +K
Sbjct: 48 EGKYKPGSKYEYILN-DYIRFLAAGNFRSGSMHMTSGLKPNAVTILYQCSGDSYNSK 103
>At4g20680.1 68417.m03006 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function that is usually associated with protein kinase
domain Pfam:PF00069; similar to receptor-like protein
kinase 5 (GI:13506747){Arabidopsis thaliana}
Length = 273
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +2
Query: 170 EKHYAKGATYHYFVGKDGSRGLITGDFRVKLKXRTMFLT*NVVICLHYCTGNKLLNK 340
E Y G+ Y Y + D R L G+FR T L N V L+ C G+ +K
Sbjct: 48 EGKYKPGSKYEYILN-DHIRFLAAGNFRSGSMHMTSGLKPNAVTILYQCRGDSYNSK 103
>At1g15980.1 68414.m01917 expressed protein
Length = 461
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +1
Query: 316 HWKQTFKQKYTE-IGLLKGRYYD 381
HW + +YT+ IGLLKGRYYD
Sbjct: 177 HWPEP--AEYTDMIGLLKGRYYD 197
>At3g61170.1 68416.m06846 pentatricopeptide (PPR) repeat-containing
protein strong similarity to PCMP-H2 [Arabidopsis
thaliana] GI:5050911; contains Pfam profile PF01535: PPR
repeat
Length = 783
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 104 NGI-ENAKLYLAVLGTIYDVTKGEKHYA 184
NG+ E+A+ Y + T+Y +T G +HYA
Sbjct: 509 NGLLEDAQRYFDSMRTVYGITPGPEHYA 536
>At3g50910.1 68416.m05574 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 403 YLEXFNRKIEQCNEEHIEIAKKKNQ 477
Y E NR++ Q N+E IE+A+++ Q
Sbjct: 380 YYEAVNREMSQRNQEAIEVARRERQ 404
>At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 551 IARSWIGVPRQMYSPGEDTPSCVCVNTENT 640
I RS++G+ SP +PS V V++EN+
Sbjct: 31 IVRSFLGIVGISLSPSSSSPSSVTVSSENS 60
>At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 551 IARSWIGVPRQMYSPGEDTPSCVCVNTENT 640
I RS++G+ SP +PS V V++EN+
Sbjct: 31 IVRSFLGIVGISLSPSSSSPSSVTVSSENS 60
>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
protein-related contains Pfam profiles PF03107: DC1
domain, weak hit to PF00628: PHD-finger
Length = 513
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = +3
Query: 489 MQYCLE*EEGTKVWCXRNSGG*HDLGLEFLVKCTLLVKILHLVCVSIPRTPY 644
+ +C E G WC G G E KCT LH+ C+ P PY
Sbjct: 407 LTFCRGDEAGGSDWCELCEGKLAIGGKEGFYKCTYCCTTLHINCLLGP-DPY 457
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,797,512
Number of Sequences: 28952
Number of extensions: 310306
Number of successful extensions: 737
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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