Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0724
         (692 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    44   0.004
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    42   0.019
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    41   0.033
UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    36   0.71 
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther...    34   2.9  
UniRef50_A4H3N1 Cluster: Putative uncharacterized protein; n=2; ...    33   5.0  
UniRef50_Q98MS1 Cluster: Mll0463 protein; n=1; Mesorhizobium lot...    33   8.8  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 44.0 bits (99), Expect = 0.004
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = -2

Query: 397 SLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRF 290
           SL T G +++   R  PLSFSPDLLSGSRFR+G  +
Sbjct: 380 SLKTTGHSTENEHRCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 41.5 bits (93), Expect = 0.019
 Identities = 20/32 (62%), Positives = 21/32 (65%)
 Frame = -2

Query: 349 PLSFSPDLLSGSRFRSGGRFCEARLLLGFVLA 254
           P+ F       SRFRS GRFCEA LLLG VLA
Sbjct: 74  PMKFLAGSSQSSRFRSDGRFCEALLLLGLVLA 105



 Score = 39.9 bits (89), Expect = 0.058
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = -3

Query: 495 SRRRPKHVISDPPDPLXVLLGTSSTGH 415
           SRR P HV+SDP D L VLL  SSTG+
Sbjct: 33  SRRHPNHVLSDPRDSLSVLLDLSSTGY 59


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=25; Arthropoda|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 986

 Score = 40.7 bits (91), Expect = 0.033
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +3

Query: 585 IIPSSRFYQRTARHQSRVHP 644
           +IP+SRFY RTARH+SRVHP
Sbjct: 898 MIPASRFYHRTARHRSRVHP 917



 Score = 39.1 bits (87), Expect = 0.10
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +2

Query: 638 SSTMRFQRSFVPRTIRLW 691
           SST+RFQRSF+PRTIRLW
Sbjct: 925 SSTVRFQRSFLPRTIRLW 942


>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 36.3 bits (80), Expect = 0.71
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = -1

Query: 578 FDKAARHENPLIVAAGNYIPDP 513
           FDKA RH+N LIVAA +Y P+P
Sbjct: 884 FDKAMRHDNRLIVAAADYSPNP 905



 Score = 35.9 bits (79), Expect = 0.94
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = -3

Query: 498 SSRRRPKHVISDPPDPLXVLLGTSST 421
           S RRRP+HV++DP DP+ + L T S+
Sbjct: 911 SHRRRPRHVLTDPSDPITLALDTFSS 936


>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
           mylitta|Rep: Reverse transcriptase-like - Antheraea
           mylitta (Tasar silkworm)
          Length = 186

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -1

Query: 578 FDKAARHENPLIVAAGNYIPDPAA 507
           F+KAA H +PL+V+A NY P P A
Sbjct: 95  FEKAANHPSPLVVSAANYQPVPNA 118


>UniRef50_A4H3N1 Cluster: Putative uncharacterized protein; n=2;
            Leishmania|Rep: Putative uncharacterized protein -
            Leishmania braziliensis
          Length = 2921

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +1

Query: 484  ATSTAFHSAAGSGM*LPAATMRGFSCRAALSKFRLYHHLVFTNAPPATRV 633
            AT+T   +   +G  + AAT R    R AL   R+ HHL+    PPA  V
Sbjct: 2547 ATTTTAKATLAAGRAVAAATARATDSREALPSVRILHHLM--RQPPAVHV 2594


>UniRef50_Q98MS1 Cluster: Mll0463 protein; n=1; Mesorhizobium
           loti|Rep: Mll0463 protein - Rhizobium loti
           (Mesorhizobium loti)
          Length = 445

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 683 GWYVAQKISGNALWMNSTLVAGGALVKTR*WYNLNFDKAAR 561
           GWYV    S + +     +V  GALVK R WY +  DK+ +
Sbjct: 232 GWYVVA--SDDTIIAPGVVVPRGALVKYREWYGVKIDKSGK 270


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 643,387,509
Number of Sequences: 1657284
Number of extensions: 12170741
Number of successful extensions: 29254
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29244
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)