Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0724
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   2.6  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    27   2.6  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    26   5.9  
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   7.9  

>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
          Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 99 PFLNILLLKLTCVYKNDELTYQYSLSDETT 10
          PF N+  L    +Y+N E  YQ ++++ET+
Sbjct: 5  PFTNLGNLDTEAIYENKENEYQTNITNETS 34


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 409 SSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLL 269
           SS+ +L T+ +TS+    H   +     L+G+     GRFC A  L+
Sbjct: 134 SSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = -2

Query: 535 PVTTFPILRQNGKQSTSPKTRHLGSSRSTXXAFRYFKHRSPFSSNPSLATKGSTSKLTLR 356
           PVT  PI  +NG +    K   LGS++ +         R+      +  +K  ++  T +
Sbjct: 16  PVT--PISNRNGTKGAGSKRAPLGSTKQSNAPSSVTVPRTVLGGKSTNISKFISAPSTKK 73

Query: 355 HSPLSFSPD 329
            SP+  S D
Sbjct: 74  MSPMDISMD 82


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = -2

Query: 556 RTLSSWLPVTTFPILRQNGKQSTSPKTRHLGSSRSTXXAFRYFKHRSPF 410
           R L    P+   P L  +G+ S   +  +      +   +++FKH+S F
Sbjct: 10  RELKDESPIGQSPHLENDGRPSLMSRYSYSSIEEVSKEGYQWFKHQSVF 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,121
Number of Sequences: 5004
Number of extensions: 48692
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)