Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0724
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0924 + 20852048-20854474                                         28   6.1  
01_06_0475 + 29610268-29610711                                         28   6.1  
10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040...    28   8.1  

>04_03_0924 + 20852048-20854474
          Length = 808

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 117 YTGIRMPFLNILLLKLTCVYKNDELTYQYSLSDETTV 7
           Y G+    + + L   T VY + E  + Y+L D+T +
Sbjct: 222 YFGLAPEMIGVALPNFTFVYNDQEAYFTYTLRDDTAI 258


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -2

Query: 418 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 329
           SP SS+P      S+++ TL HSP S SPD
Sbjct: 54  SPMSSSPP---SRSSTRATLTHSPSSASPD 80


>10_08_0180 +
           15502809-15503312,15503399-15503454,15503934-15504053,
           15504190-15504260,15504603-15504696,15504772-15504978,
           15505406-15505657,15505781-15505889,15506112-15506179,
           15506278-15506347,15506429-15506503,15506600-15506691,
           15506779-15506860
          Length = 599

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +1

Query: 487 TSTAFHSAAGSGM*LPAATMRGFSCRAALSKFRLYHHLVFTNAPPATRVEFIHNAFPEIF 666
           +S   H+AAGSG+    +T+ G  CR  ++K    + L      PA +V  IH   P+ +
Sbjct: 149 SSPGLHAAAGSGLAEECSTLGG--CRTGMAKMTNAYDL------PARKV--IHTVGPK-Y 197

Query: 667 CATYHPA 687
              YH A
Sbjct: 198 AVKYHTA 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,942,697
Number of Sequences: 37544
Number of extensions: 357138
Number of successful extensions: 805
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)