Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0724
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5826| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.89 
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)            29   4.7  
SB_12273| Best HMM Match : fn3 (HMM E-Value=0.021)                     29   4.7  
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)               28   6.2  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_14244| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_5826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = +3

Query: 369 LLVEPFVASDGFDENGDRCLKYLKAXLVDREDPR*RVLGD--VDCFPFCRRIGNVVTGSH 542
           LLV  F+A   + E+ +RCLK ++A   +   P  R+L D  VD  P    +  ++ G +
Sbjct: 93  LLVAAFIAGSSYAESLERCLKEIQAAKKELRCPECRILVDQEVDELPSNILLVRILEGLN 152

Query: 543 DER 551
            +R
Sbjct: 153 RKR 155


>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +3

Query: 546  ERVLVS---CRFIEV*IIPSSRFYQRTARHQSRVHPQCVSRDLLC 671
            +R+++S   C  + V  +P  R   ++ + Q  V+ QCVSRDL+C
Sbjct: 1095 DRIIISTETCEQLPVHSVPGFRCPDKSTQFQC-VNGQCVSRDLIC 1138


>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
          Length = 524

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 525 HSRSCGRMESSRRRPKHVISDPPDPLXVL 439
           H   C     + R+P H +  PPD L  L
Sbjct: 416 HQTDCAHCTDTTRQPVHTVQSPPDRLCAL 444


>SB_12273| Best HMM Match : fn3 (HMM E-Value=0.021)
          Length = 317

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -1

Query: 572 KAARHENPLIVAAGNYIPDPAAEWKAVDVAQNTSSRILPIH*XCF*VL 429
           + ARHE  + V  G   P P   W   D   NTSS  + I+   F +L
Sbjct: 32  RRARHEIGVQVLFGAPFPQPYVHWYKNDTLLNTSSAGVAIYGDTFTIL 79


>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
          Length = 625

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = -2

Query: 565 HDTRTLSSWLPVTTFPILRQNGKQSTSPKTRHLGSSRSTXXAFRYFKHRSPFSSNPSLAT 386
           ++T TL +  P  + P  R  G    S K+   GS  ST       KH SP  S+  + T
Sbjct: 462 YETPTLRT--PTLSAPPPRPQGNLLESLKSSE-GSMESTSNDSPLRKHSSPSLSDAIMRT 518

Query: 385 KGSTS 371
           KG+T+
Sbjct: 519 KGTTN 523


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 278 ALARVRVSTSLGLSPVSSPTSH--GYSEIAPKAISL 177
           A+  V+ S  LGL+P +    +  GY+E+ PKA SL
Sbjct: 820 AIGNVKQSEVLGLTPHADDVVYAPGYTELQPKAASL 855


>SB_14244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 592 GII*TSIKRHDTRTLSSWLPVTTFPILRQNGKQST 488
           G+I    KR D    ++WLP+T F ++ Q    +T
Sbjct: 69  GLISILYKRDDALHCTNWLPITQFIVVSQYADDTT 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,987,429
Number of Sequences: 59808
Number of extensions: 376956
Number of successful extensions: 912
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)