Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0724
         (692 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.             31   5.2  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    31   5.2  
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro...    31   5.2  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     31   5.2  
Y18448-1|CAA77176.1| 3851|Homo sapiens Bassoon protein protein.        30   9.0  
AF052224-1|AAC83555.1| 3926|Homo sapiens neuronal double zinc fi...    30   9.0  

>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
          Length = 1791

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
 Frame = -2

Query: 526  TFPILRQNGKQSTSPKTRHLGSSRSTXXAFRYFKHRSP-------FSSNPSLATKGSTSK 368
            T P+ R+  +  TSP TR    SR++    R  + R+P        S  P L  K S S+
Sbjct: 1018 TSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSR 1077

Query: 367  --LTLRHSPLSFSPDLLSGSR 311
              L +R    S +P    G R
Sbjct: 1078 SPLAIRRRSRSRTPRTARGKR 1098


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
          Length = 2752

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
 Frame = -2

Query: 526  TFPILRQNGKQSTSPKTRHLGSSRSTXXAFRYFKHRSP-------FSSNPSLATKGSTSK 368
            T P+ R+  +  TSP TR    SR++    R  + R+P        S  P L  K S S+
Sbjct: 1986 TSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSR 2045

Query: 367  --LTLRHSPLSFSPDLLSGSR 311
              L +R    S +P    G R
Sbjct: 2046 SPLAIRRRSRSRTPRTARGKR 2066


>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
           protein.
          Length = 1275

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
 Frame = -2

Query: 526 TFPILRQNGKQSTSPKTRHLGSSRSTXXAFRYFKHRSP-------FSSNPSLATKGSTSK 368
           T P+ R+  +  TSP TR    SR++    R  + R+P        S  P L  K S S+
Sbjct: 509 TSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSR 568

Query: 367 --LTLRHSPLSFSPDLLSGSR 311
             L +R    S +P    G R
Sbjct: 569 SPLAIRRRSRSRTPRTARGKR 589


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 30.7 bits (66), Expect = 5.2
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
 Frame = -2

Query: 526  TFPILRQNGKQSTSPKTRHLGSSRSTXXAFRYFKHRSP-------FSSNPSLATKGSTSK 368
            T P+ R+  +  TSP TR    SR++    R  + R+P        S  P L  K S S+
Sbjct: 2034 TSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSR 2093

Query: 367  --LTLRHSPLSFSPDLLSGSR 311
              L +R    S +P    G R
Sbjct: 2094 SPLAIRRRSRSRTPRTARGKR 2114


>Y18448-1|CAA77176.1| 3851|Homo sapiens Bassoon protein protein.
          Length = 3851

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 281  TALARVRVSTSLGLSPVSS-PTSHGYSEIAPKAIS 180
            T +     STS   SP  + PT+HGYS+  P ++S
Sbjct: 1494 TRMVHASASTSPLCSPTETQPTTHGYSQTTPPSVS 1528


>AF052224-1|AAC83555.1| 3926|Homo sapiens neuronal double zinc finger
            protein protein.
          Length = 3926

 Score = 29.9 bits (64), Expect = 9.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 281  TALARVRVSTSLGLSPVSS-PTSHGYSEIAPKAIS 180
            T +     STS   SP  + PT+HGYS+  P ++S
Sbjct: 1569 TRMVHASASTSPLCSPTETQPTTHGYSQTTPPSVS 1603


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,624,065
Number of Sequences: 237096
Number of extensions: 1869340
Number of successful extensions: 7215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7211
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)