Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0724
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL161712-14|CAC35895.1|  286|Caenorhabditis elegans Hypothetical...    28   5.5  
Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related n...    28   7.3  
AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily a...    27   9.6  

>U97192-2|AAO38678.1|  622|Caenorhabditis elegans Hypothetical
           protein C01F4.2b protein.
          Length = 622

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -2

Query: 499 KQSTSPKTRHLGSSRSTXXAFRYFKHRSPFSSNPSLATKGSTS--KLTLRHSPLSFS 335
           + STS +     S       +R FKHR+ F S  S   K      +LTLRH  +  S
Sbjct: 110 QMSTSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSS 166


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical
           protein C01F4.2a protein.
          Length = 986

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -2

Query: 499 KQSTSPKTRHLGSSRSTXXAFRYFKHRSPFSSNPSLATKGSTS--KLTLRHSPLSFS 335
           + STS +     S       +R FKHR+ F S  S   K      +LTLRH  +  S
Sbjct: 110 QMSTSRRLAGFASRSIRKSQWRLFKHRTFFGSQRSSMKKNQLQLPRLTLRHPSIDSS 166


>AL161712-14|CAC35895.1|  286|Caenorhabditis elegans Hypothetical
           protein Y66D12A.18 protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = -2

Query: 577 SIKRHDTRTLSSWLPVTTFPILRQNGKQSTSPKTRHLGSSRSTXXAFRYFKHRSPFSSNP 398
           ++ R D  +    LP  T P   Q+ K   +PKT   GS  S    F +    + F +NP
Sbjct: 183 ALGRRDASSRGRSLPPRTLP---QDLKVEDAPKTVVGGSFGSRSNVFDHNSMTTTFQANP 239

Query: 397 SLATKGSTS 371
             AT   ++
Sbjct: 240 QFATHNGSN 248


>Z82257-1|CAB05120.2| 1043|Caenorhabditis elegans Hypothetical
           protein C01C7.1 protein.
          Length = 1043

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 566 PLYRSLDYTIISFLPTHRPPPE*SSSTMRF 655
           PL  S++ TI S   TH+PPP+ S + +RF
Sbjct: 754 PLLDSMNRTISSST-THQPPPQSSEARIRF 782


>AJ271057-1|CAB65957.1| 1043|Caenorhabditis elegans Ack related
           non-receptor tyrosinekinase protein.
          Length = 1043

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 566 PLYRSLDYTIISFLPTHRPPPE*SSSTMRF 655
           PL  S++ TI S   TH+PPP+ S + +RF
Sbjct: 754 PLLDSMNRTISSST-THQPPPQSSEARIRF 782


>AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 63 protein.
          Length = 604

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = -2

Query: 550 LSSWLPVTTFPILRQNGKQSTSPKTRHLGSSRSTXXAFRYFKHRSPFSSNPSLATKGSTS 371
           +S+  P+ +  +     K++T P + +    R+   + +  K  SP  S+PS+ T   T 
Sbjct: 359 ISTPKPLISSSLAEPENKENTKPNSPYSLRKRAVDSSKKPGKSDSPAVSSPSITTPVPTR 418

Query: 370 KLTLRHS 350
              LR S
Sbjct: 419 PTRLRKS 425


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,539,326
Number of Sequences: 27780
Number of extensions: 278546
Number of successful extensions: 708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)