Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0724
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43995.1 68414.m05075 hypothetical protein similar to putativ...    31   0.73 
At1g18500.1 68414.m02309 2-isopropylmalate synthase, putative st...    29   2.2  
At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containi...    29   2.9  
At1g79060.1 68414.m09218 expressed protein                             29   2.9  
At3g12690.3 68416.m01586 protein kinase, putative similar to vir...    28   5.1  
At3g12690.2 68416.m01585 protein kinase, putative similar to vir...    28   5.1  
At3g12690.1 68416.m01584 protein kinase, putative similar to vir...    28   5.1  
At1g74690.1 68414.m08650 calmodulin-binding family protein low s...    28   5.1  
At4g08860.1 68417.m01456 hypothetical protein                          28   6.8  
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea...    28   6.8  
At2g37930.1 68415.m04656 expressed protein                             27   8.9  

>At1g43995.1 68414.m05075 hypothetical protein similar to putative
           non-LTR retroelement reverse transcriptase GI:4544460
           from [Arabidopsis thaliana]
          Length = 126

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = -1

Query: 665 KISGNALWMNSTLVAGGALVKTR*WYNLNFDKAARHENPLIVAAGNYIPDPAAEWKAVDV 486
           K++G +  + S  +  G  V +  W  LN D A+R  NP +  AG  + D   EW     
Sbjct: 41  KMNGTSGSVGSIDILVGWSVPSEGWLKLNTDGASRG-NPTLSTAGGVLRDREGEWLG-GF 98

Query: 485 AQNTSSRILPI 453
           + N   R  P+
Sbjct: 99  SLNIGRRTAPV 109


>At1g18500.1 68414.m02309 2-isopropylmalate synthase, putative
           strong similarity to 2-isopropylmalate synthase (IMS1)
           [Arabidopsis thaliana] GI:12330687; contains Pfam
           profile PF00682: HMGL-like
          Length = 631

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +2

Query: 569 LYRSLDYTIISFLPTHRPPPE*SSSTMRFQRS 664
           LY S   T  SFLPT    P   SS+ RFQ S
Sbjct: 11  LYSSTTITTTSFLPTFSSKPTPISSSFRFQPS 42


>At4g01030.1 68417.m00140 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 500

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
 Frame = +3

Query: 330 SGEKLSGLCLRVNLLVEPFVAS---DGFDENGD 419
           SG+++ G CLR NL+ + +VA+   D + ++GD
Sbjct: 146 SGKEVHGFCLRKNLICDAYVATALVDMYGKSGD 178


>At1g79060.1 68414.m09218 expressed protein
          Length = 396

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -2

Query: 556 RTLSSWLPVTTFPILRQNGKQSTSPKTRHLGSSRSTXXAFRYFKHRSPFSSNPS 395
           R  S W  +       QN  +S S  T    + RS+  + + F HRS  SS+ S
Sbjct: 119 RCSSRWRDLLGLKRFSQNSSKSASTATTTTTNPRSSTSSLKQFLHRSSRSSSSS 172


>At3g12690.3 68416.m01586 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = -2

Query: 520 PILRQNGKQSTSPKTRHLGSSRSTXXAFR------YFKHRSPFSSNPSLATKGSTSKLTL 359
           PI  ++ + S SP +  LG +      F         KH+ P S  P  +T+G+ S+  L
Sbjct: 19  PIKPKSPRSSLSPFSLKLGDNVPRNPHFDPKKMDPLVKHQPPKSLEPPPSTRGTNSEGDL 78

Query: 358 RHSPLSFSPDLLS 320
           +H+  S   D L+
Sbjct: 79  KHNTYSSDGDSLA 91


>At3g12690.2 68416.m01585 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = -2

Query: 520 PILRQNGKQSTSPKTRHLGSSRSTXXAFR------YFKHRSPFSSNPSLATKGSTSKLTL 359
           PI  ++ + S SP +  LG +      F         KH+ P S  P  +T+G+ S+  L
Sbjct: 19  PIKPKSPRSSLSPFSLKLGDNVPRNPHFDPKKMDPLVKHQPPKSLEPPPSTRGTNSEGDL 78

Query: 358 RHSPLSFSPDLLS 320
           +H+  S   D L+
Sbjct: 79  KHNTYSSDGDSLA 91


>At3g12690.1 68416.m01584 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = -2

Query: 520 PILRQNGKQSTSPKTRHLGSSRSTXXAFR------YFKHRSPFSSNPSLATKGSTSKLTL 359
           PI  ++ + S SP +  LG +      F         KH+ P S  P  +T+G+ S+  L
Sbjct: 19  PIKPKSPRSSLSPFSLKLGDNVPRNPHFDPKKMDPLVKHQPPKSLEPPPSTRGTNSEGDL 78

Query: 358 RHSPLSFSPDLLS 320
           +H+  S   D L+
Sbjct: 79  KHNTYSSDGDSLA 91


>At1g74690.1 68414.m08650 calmodulin-binding family protein low
           similarity to SF16 protein [Helianthus annuus]
           GI:560150; contains Pfam profile PF00612: IQ
           calmodulin-binding motif
          Length = 587

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -2

Query: 529 TTFPILRQNGKQSTSPKTRHLGSSRSTXXAFRYFKHRSPFSSNPSL--ATKGSTSKLTLR 356
           T  P  ++N     + K+R  GS+ S         H     S PS   ATK + +KL L+
Sbjct: 456 TPKPNNKENSAGKENQKSRKKGSATSKTEREESNGHHETSPSIPSYMQATKSAKAKLRLQ 515

Query: 355 HSPLSFSPD 329
            SP S   D
Sbjct: 516 GSPKSAEQD 524


>At4g08860.1 68417.m01456 hypothetical protein
          Length = 214

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 593 WYNLNFDKAARHENPLIVAAGNYIPDPAAEWK 498
           W  LN D A+R  NP + AAG  + +   EW+
Sbjct: 53  WCKLNTDGASRG-NPGLAAAGGVLRESNGEWR 83


>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
           family protein similar to PAK/PLC-interacting protein 1
           (GI:4211689)  {Homo sapiens}
          Length = 1115

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 572 YRSLDYTIISFLPTHRPPPE*SSSTMRFQRSF 667
           YR+  Y ++S+  TH+PP E   + +R Q+ +
Sbjct: 194 YRATYYQVMSYGETHQPPRECIETPVRRQKEY 225


>At2g37930.1 68415.m04656 expressed protein
          Length = 467

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = -2

Query: 517 ILRQNGKQSTSPKTRHLGSSRSTXXAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSF 338
           +L QN    +S K R    +R    +F + +    FSS  S ++  STS  + +  PL+F
Sbjct: 92  LLDQNIPTMSSKKERDPSPNRR--FSFSFSQMSRSFSSKESSSSLSSTSHASAKSGPLTF 149

Query: 337 SPDLLS--GSRFRSGG 296
           +  + +   +R +S G
Sbjct: 150 TNSVYTTHSTRTKSNG 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,953,551
Number of Sequences: 28952
Number of extensions: 269484
Number of successful extensions: 685
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)