Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0723
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    29   0.48 
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    28   1.5  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   5.9  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   7.8  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   7.8  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 90  VEFPQKIIPYLRQDSTTPRYAVSKASVFK--IEDNLKSA*AEELT 218
           VEF  K IPYLR        A+ K  V     ED+LK+   E L+
Sbjct: 490 VEFEHKFIPYLRSSGAEIMEAIRKEGVLSKTTEDSLKAVIKEFLS 534


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 246 FQSICCQFLHRGNLHFLFHIYDCYYYKWSNLYIYFFDKIA*ILFFLNL 389
           F +I   F+   N H+LF++++  +  W   Y+  F  +    FFL++
Sbjct: 310 FNTIFHPFILADNRHYLFYVFNRLFRIWWLKYLGPFSYLILYYFFLDI 357


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
            Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/59 (23%), Positives = 24/59 (40%)
 Frame = -1

Query: 262  QQIDWKSHTDGLCKRVSSSAYALFKLSSILNTDALLTAYRGVVESCLRYGIIFWGNSTQ 86
            QQ D   +  G+C  +  + +      ++     LL+   GV+   L YG  F G   +
Sbjct: 943  QQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCFGGTKVE 1001


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = +3

Query: 279 GNLHFLF-HIYDCYYYKWSNLYIYFFDKIA*ILFFLNLEP*DF---TIVCHQL*ELR-LK 443
           G+L  +F HIY      W NLY +    IA  L F+ L    F     +C  L  LR LK
Sbjct: 405 GSLSIIFIHIYCFKITSWVNLYGWITCTIARTLSFIKLNIRTFYLTAFLCALLNFLRYLK 464

Query: 444 SRN 452
            RN
Sbjct: 465 YRN 467


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 363 QFYQRNKYINLTIYNNNNHIYETENVDFLGVK 268
           QFYQ    +N   + N +H+Y+  N   +  K
Sbjct: 500 QFYQSIMDLNNDCFTNTSHLYDVLNAQRISFK 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,022
Number of Sequences: 5004
Number of extensions: 53258
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)