Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0723
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1343 - 29463880-29464054,29464460-29464611,29464734-294648...    32   0.49 
11_03_0112 - 10135052-10135168,10135712-10135795,10135879-101359...    29   4.6  
07_01_0616 + 4560866-4560952,4561144-4561208,4564481-4564913,456...    29   4.6  

>06_03_1343 -
           29463880-29464054,29464460-29464611,29464734-29464889,
           29465010-29465316,29465411-29465527,29465600-29465934
          Length = 413

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 181 SILNTDALLTAYRGVVESCLRYGIIFWGN 95
           ++  T+ +   Y G+V SCL Y I+ W N
Sbjct: 293 ALTTTEIIAILYAGIVASCLNYAIMTWSN 321


>11_03_0112 -
           10135052-10135168,10135712-10135795,10135879-10135953,
           10137801-10137978,10138048-10138212,10138291-10138337,
           10140233-10140301,10140531-10140629,10141256-10141375,
           10141459-10141581,10149251-10149364,10150725-10150913,
           10151058-10151110,10151365-10151470,10151957-10152085
          Length = 555

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 187 LSSILNTDALLTAYRGV-VESCLRYGIIFWGNSTQKDQVFKAQKRCLRSMFGL 32
           +  +++   L   YRGV +ESC++  ++F  N  Q D  + A+       +G+
Sbjct: 359 IQGLISFTELYPGYRGVEIESCIKNAVMFIENKQQNDGSWYAKFNARYGTWGI 411


>07_01_0616 +
           4560866-4560952,4561144-4561208,4564481-4564913,
           4565634-4565786,4565875-4565946,4567602-4567712,
           4568344-4568584,4568743-4568821,4568892-4569018
          Length = 455

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 145 RGVVESCLRYGIIFWGNSTQKDQVFKAQKRCLRSMFGLA 29
           +GV ES L YGI+F       D V K+ K      FG+A
Sbjct: 407 KGVTESVLSYGIVFKHQLVIVDIVAKSAKNVCIFEFGIA 445


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,244,247
Number of Sequences: 37544
Number of extensions: 293176
Number of successful extensions: 535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)