Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0723
         (688 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    27   0.55 
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    27   0.73 
AJ000502-1|CAA04136.1|  299|Anopheles gambiae iron regulatory pr...    23   9.0  
AF316637-1|AAG45165.1|  224|Anopheles gambiae glutathione S-tran...    23   9.0  

>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 27.1 bits (57), Expect = 0.55
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
 Frame = -1

Query: 259 QIDWKSHTDGLCKRVSSSAYALFKLSSILNTDALLTAYR----GVVESCLRYGIIFWGNS 92
           Q+ WKSH +    +   +A AL  L  + N      A R     VV+S LRY    W  +
Sbjct: 761 QLSWKSHVEYCTTKALRTAKALGCL--MRNHSGPKCAKRRLLASVVDSILRYAAPVWHEA 818

Query: 91  TQKDQ----VFKAQKRC 53
           T+  +    + + QK C
Sbjct: 819 TKNQECRRMLQRVQKHC 835



 Score = 23.0 bits (47), Expect = 9.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 354 QRNKYINLTIYNNNNHIYETENVDFLGVKIDNK 256
           +R   IN+ +  N      T ++ +LGV IDN+
Sbjct: 729 KRQGNINVPVVINGVERRTTRSIRYLGVVIDNQ 761


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 26.6 bits (56), Expect = 0.73
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -1

Query: 259 QIDWKSHTDGLCKRVSSSAYALFKLSSILN--TDALLTAYRGVVESCLRYGIIFWGNSTQ 86
           ++ +KSH +  CK+V  +  AL   +  +     ++   +     S LRYG   W +  +
Sbjct: 776 RLKFKSHLEEACKKVMKAINALAAFTPNIGGPCSSIRRLHANCAISVLRYGAPVWAHILK 835

Query: 85  KDQ 77
           + Q
Sbjct: 836 EKQ 838


>AJ000502-1|CAA04136.1|  299|Anopheles gambiae iron regulatory
           protein protein.
          Length = 299

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 49  RSMFGLAIADSCKPY 5
           + +F +AI +SCKP+
Sbjct: 242 QELFSIAIPESCKPH 256


>AF316637-1|AAG45165.1|  224|Anopheles gambiae glutathione
           S-transferase D8 protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 512 FYYHPLHTYIHS-YICNKSVKIS 447
           FYYHP   Y  S  +  K++K+S
Sbjct: 3   FYYHPASPYCRSVMLVAKALKLS 25


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,213
Number of Sequences: 2352
Number of extensions: 13031
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)