Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0723
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase prote...    31   1.0  
L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase prote...    31   1.0  
Z81491-1|CAB04019.1|  181|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81142-9|CAB03501.2|  370|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    27   9.5  

>L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase protein
           2, isoform b protein.
          Length = 665

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +2

Query: 386 FRALRFYNSMPSTLRVKA*EPKSSLTYCICMNVYMYVMDGSKTKLTLNYKLFY 544
           +RAL   +S+ S + +   EPKS L Y         V D  K  LTL+ K+ Y
Sbjct: 16  YRALHSSSSIWSKVAISKFEPKSYLPYEKLSQTVKIVKDRLKRPLTLSEKILY 68


>L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase protein
           2, isoform a protein.
          Length = 777

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +2

Query: 386 FRALRFYNSMPSTLRVKA*EPKSSLTYCICMNVYMYVMDGSKTKLTLNYKLFY 544
           +RAL   +S+ S + +   EPKS L Y         V D  K  LTL+ K+ Y
Sbjct: 16  YRALHSSSSIWSKVAISKFEPKSYLPYEKLSQTVKIVKDRLKRPLTLSEKILY 68


>Z81491-1|CAB04019.1|  181|Caenorhabditis elegans Hypothetical
           protein D1086.1 protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 97  NSTQKDQVFKAQKRCLRSMFGLAIADS 17
           ++ QK   FKA+K+C+   FG A  DS
Sbjct: 134 STDQKCAQFKAKKQCIEKDFGKACGDS 160


>Z81142-9|CAB03501.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK1037.1 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 333 LTIYNNNNHIYETENVDFLGVKIDNK*IGNLIQTDCVNV 217
           +T  +N +  +E   VDF+  K D   +GN I   C +V
Sbjct: 203 MTFLSNPDVDFEISQVDFINTKTDTCNVGNGIPEGCKHV 241


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.2 protein.
          Length = 1594

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 656 SPIDDGNQSPARCARMIVC 600
           SP+ +GN SP RCAR   C
Sbjct: 505 SPLTNGNGSPQRCARDTDC 523


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,740
Number of Sequences: 27780
Number of extensions: 296183
Number of successful extensions: 519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)