Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0723
(688 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 29 0.031
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 29 0.041
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 29 0.041
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 27 0.13
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 27 0.22
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 25 0.89
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 24 1.2
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 24 1.2
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 24 1.2
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 24 1.6
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 24 1.6
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 24 1.6
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 23 3.6
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 23 3.6
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 22 4.8
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 22 4.8
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 22 4.8
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 22 4.8
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 22 4.8
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 22 4.8
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 22 6.3
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 22 6.3
DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex det... 21 8.3
DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex det... 21 8.3
DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex det... 21 8.3
DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex det... 21 8.3
DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex det... 21 8.3
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 21 8.3
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 21 8.3
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 29.5 bits (63), Expect = 0.031
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = -2
Query: 336 NLTIYNNNNHIYETENVDFLGVKIDN-------K*IGNLIQTDCVNVSAPRPMHSLNYP 181
N TI+NNNN+ Y N ++ +N K N+I + + V P P++ N+P
Sbjct: 320 NKTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQIPVPVPVPIYCGNFP 378
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 29.1 bits (62), Expect = 0.041
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 336 NLTIYNNNNHIYETENVDFLGVKIDNK*IGNLIQTDCVNVSAPRPMHSLNYP 181
N TI+NNN + Y N ++ + K N+I + + V P P++ N+P
Sbjct: 86 NNTIHNNN-YKYNYNNNNYNNNNYNKKLYYNIINIEQIPVPVPVPVYCGNFP 136
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 29.1 bits (62), Expect = 0.041
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 336 NLTIYNNNNHIYETENVDFLGVKIDNK*IGNLIQTDCVNVSAPRPMHSLNYP 181
N TI+NNN + Y N ++ + K N+I + + V P P++ N+P
Sbjct: 86 NNTIHNNN-YKYNYNNNNYNNNNYNKKLYYNIINIEQIPVPVPVPVYCGNFP 136
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 27.5 bits (58), Expect = 0.13
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = -2
Query: 336 NLTIYNNNNHIYETENVDFLGVKIDN-----K*IGNLIQTDCVNVSAPRPMHSLNYP 181
N TI+NNNN+ N ++ +N K N+I + + V P P++ N+P
Sbjct: 320 NKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQIPVPVPVPIYCGNFP 376
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 26.6 bits (56), Expect = 0.22
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -2
Query: 336 NLTIYNNNNHIYETENVDFLGVKIDNK*IGNLIQTDCVNVSAPRPMHSLNYP 181
N TI+NNNN+ Y N ++ K N+ + + V P P++ N+P
Sbjct: 87 NRTIHNNNNYKYNYNNNNY--NNNCKKLYYNINYIEQIPVPVPVPIYCGNFP 136
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 24.6 bits (51), Expect = 0.89
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -2
Query: 357 YQRNKYINLTIYNNNNHIYETENVDFLGVKIDNK*IGNLIQTDCVNVSAPRPM 199
Y+ + Y N YNNNN+ + + + I+ + I + C N PRPM
Sbjct: 322 YKYSNYNNYNNYNNNNYNNYNKKLYYKNYIINIEQIPVPVPIYCGNF-PPRPM 373
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 24.2 bits (50), Expect = 1.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 336 NLTIYNNNNHIYETENVDF 280
N TI+NNNN+ Y N ++
Sbjct: 87 NKTIHNNNNYKYNYNNNNY 105
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 24.2 bits (50), Expect = 1.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 336 NLTIYNNNNHIYETENVDF 280
N TI+NNNN+ Y N ++
Sbjct: 87 NKTIHNNNNYKYNYNNNNY 105
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 24.2 bits (50), Expect = 1.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 336 NLTIYNNNNHIYETENVDF 280
N TI+NNNN+ Y N ++
Sbjct: 87 NKTIHNNNNYKYNYNNNNY 105
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.8 bits (49), Expect = 1.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 336 NLTIYNNNNHIYETEN 289
N TI+NNNN+ Y N
Sbjct: 87 NKTIHNNNNYKYNYNN 102
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.8 bits (49), Expect = 1.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 336 NLTIYNNNNHIYETEN 289
N TI+NNNN+ Y N
Sbjct: 87 NKTIHNNNNYKYNYNN 102
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 23.8 bits (49), Expect = 1.6
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -2
Query: 336 NLTIYNNNNH---IYETENVDFLGVKIDNK*IGNLIQTDCVNVSAPRPMHSLNYP 181
N TI+NNNN+ Y N + K N+ + + V P P++ N+P
Sbjct: 87 NKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVPVPVPIYCGNFP 141
Score = 21.8 bits (44), Expect = 6.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 357 YQRNKYINLTIYNNNNH 307
Y N Y N YNNNN+
Sbjct: 96 YNNNNYNNYN-YNNNNY 111
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 518 IWFYYHPLHTYIHSY 474
IW Y+ PL I+SY
Sbjct: 222 IWVYFVPLFLIIYSY 236
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 518 IWFYYHPLHTYIHSY 474
IW Y+ PL I+SY
Sbjct: 98 IWVYFVPLFLIIYSY 112
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 4.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 345 KYINLTIYNNNNH 307
KY N YNNNN+
Sbjct: 90 KYSNYNNYNNNNY 102
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 4.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 345 KYINLTIYNNNNH 307
KY N YNNNN+
Sbjct: 90 KYSNYNNYNNNNY 102
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 4.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 345 KYINLTIYNNNNH 307
KY N YNNNN+
Sbjct: 90 KYSNYNNYNNNNY 102
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 4.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -2
Query: 345 KYINLTIYNNNNH 307
KY N YNNNN+
Sbjct: 90 KYSNYNNYNNNNY 102
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 4.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -2
Query: 336 NLTIYNNNNHIYETENVDFLGVKIDNK*IGNLIQTDCVNVSAPRPMHSLNYP 181
N TI+NNNN+ N ++ K K N+ + V V P P++ N+P
Sbjct: 87 NKTIHNNNNY----NNNNYNNYK---KLYYNINYIEQVPVPIPVPIYCGNFP 131
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 22.2 bits (45), Expect = 4.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -2
Query: 246 NLIQTDCVNVSAPRPMHSLNYP 181
N+I + + V P P+H N+P
Sbjct: 335 NIINIEQIPVPVPVPIHCGNFP 356
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 21.8 bits (44), Expect = 6.3
Identities = 9/15 (60%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Frame = -2
Query: 348 NKYI-NLTIYNNNNH 307
N YI N++ YNNNN+
Sbjct: 87 NNYISNISNYNNNNN 101
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 21.8 bits (44), Expect = 6.3
Identities = 9/15 (60%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Frame = -2
Query: 348 NKYI-NLTIYNNNNH 307
N YI N++ YNNNN+
Sbjct: 325 NNYISNISNYNNNNN 339
>DQ325130-1|ABD14144.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.4 bits (43), Expect = 8.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 348 NKYINLTIYNNNNHIYETENVDFL 277
N Y N + YNNNN+ N++++
Sbjct: 87 NNY-NYSNYNNNNYKQLCYNINYI 109
>DQ325129-1|ABD14143.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.4 bits (43), Expect = 8.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 348 NKYINLTIYNNNNHIYETENVDFL 277
N Y N + YNNNN+ N++++
Sbjct: 87 NNY-NYSNYNNNNYKQLCYNINYI 109
>DQ325128-1|ABD14142.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.4 bits (43), Expect = 8.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 348 NKYINLTIYNNNNHIYETENVDFL 277
N Y N + YNNNN+ N++++
Sbjct: 87 NNY-NYSNYNNNNYKQLCYNINYI 109
>DQ325127-1|ABD14141.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.4 bits (43), Expect = 8.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 348 NKYINLTIYNNNNHIYETENVDFL 277
N Y N + YNNNN+ N++++
Sbjct: 87 NNY-NYSNYNNNNYKQLCYNINYI 109
>DQ325125-1|ABD14139.1| 174|Apis mellifera complementary sex
determiner protein.
Length = 174
Score = 21.4 bits (43), Expect = 8.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 348 NKYINLTIYNNNNHIYETENVDFL 277
N Y N + YNNNN+ N++++
Sbjct: 87 NNY-NYSNYNNNNYKQLCYNINYI 109
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 8.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 336 NLTIYNNNNHIYETENVDFLGVKIDNK*IGNLIQTDCVNVSAPRPM 199
N TI+NNNN+ + + + + I+ I + C N PRPM
Sbjct: 320 NKTIHNNNNYKNYNKKLYYNIINIEQ--IPVPVPVYCGNF-PPRPM 362
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 21.4 bits (43), Expect = 8.3
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +2
Query: 473 CMNVYMYVMDGSKTKLTLNYKLFYLQ 550
C++ Y+Y + K +L L +L +L+
Sbjct: 322 CLDPYVYAISHPKYRLELQKRLPWLE 347
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,410
Number of Sequences: 438
Number of extensions: 4393
Number of successful extensions: 38
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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