Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0723
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19185.1 68417.m02831 integral membrane family protein contai...    30   1.7  
At3g45870.1 68416.m04964 integral membrane family protein / nodu...    29   2.2  
At5g45370.3 68418.m05573 nodulin-related / integral membrane fam...    28   5.0  
At5g45370.2 68418.m05572 nodulin-related / integral membrane fam...    28   5.0  
At5g45370.1 68418.m05571 nodulin-related / integral membrane fam...    28   5.0  

>At4g19185.1 68417.m02831 integral membrane family protein contains
           Pfam profile:PF00892 integral membrane protein DUF6
          Length = 398

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 178 ILNTDALLTAYRGVVESCLRYGIIFWGN 95
           +  ++ L   Y GV+ S L YG++ W N
Sbjct: 269 LTQSEVLAVIYAGVIASALNYGLLTWSN 296


>At3g45870.1 68416.m04964 integral membrane family protein / nodulin
           MtN21-related simlar to MtN21 GI:2598575 (root nodule
           development)  Medicago truncatula, EMBL:MTY15293
          Length = 385

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 181 SILNTDALLTAYRGVVESCLRYGIIFWGN 95
           S+  ++     Y GV+ S L YG++ W N
Sbjct: 255 SLTRSEFFAVVYAGVIASALNYGLLTWSN 283


>At5g45370.3 68418.m05573 nodulin-related / integral membrane family
           protein contains Pfam profile:PF00892 integral membrane
           protein DUF6
          Length = 321

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 181 SILNTDALLTAYRGVVESCLRYGIIFWGN 95
           S+  ++ L   + GV  S L YG++ W N
Sbjct: 207 SLTQSEVLAVIFAGVFASALNYGLLTWSN 235


>At5g45370.2 68418.m05572 nodulin-related / integral membrane family
           protein contains Pfam profile:PF00892 integral membrane
           protein DUF6
          Length = 381

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 181 SILNTDALLTAYRGVVESCLRYGIIFWGN 95
           S+  ++ L   + GV  S L YG++ W N
Sbjct: 267 SLTQSEVLAVIFAGVFASALNYGLLTWSN 295


>At5g45370.1 68418.m05571 nodulin-related / integral membrane family
           protein contains Pfam profile:PF00892 integral membrane
           protein DUF6
          Length = 357

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 181 SILNTDALLTAYRGVVESCLRYGIIFWGN 95
           S+  ++ L   + GV  S L YG++ W N
Sbjct: 243 SLTQSEVLAVIFAGVFASALNYGLLTWSN 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,603,088
Number of Sequences: 28952
Number of extensions: 257408
Number of successful extensions: 442
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)