Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0722
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo... 77 3e-15
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch... 28 1.1
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 1.9
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 27 1.9
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 4.4
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 26 5.8
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 7.7
SPCC1682.05c |||signal recognition particle subunit |Schizosacch... 25 7.7
>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 76.6 bits (180), Expect = 3e-15
Identities = 48/135 (35%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Frame = +3
Query: 255 GAGALVLVSEEAAKNL--KPLARLVGWAYVGVDPSIMGIGPVPAIENLLKVTKLTLNDVD 428
GA ALVL+S K L KPLA+++GW DP P AI LK + + VD
Sbjct: 255 GASALVLMSAAKVKELGLKPLAKIIGWGEAAQDPERFTTSPSLAIPKALKHAGIEASQVD 314
Query: 429 LIEINEAFVAQTLSCAKALKLDMSKLKSTEAPPRWGHPLGASGSRITXXXXXXXXXXXXX 608
EINEAF ++ K L LD ++ GHPLG+SGSRI
Sbjct: 315 YYEINEAFSVVAVANTKILGLDPERVNINGGGVAMGHPLGSSGSRIICTLAYILAQKDAK 374
Query: 609 XXXXSACIRRGGRAS 653
+ C GG +S
Sbjct: 375 IGVAAVCNGGGGASS 389
Score = 46.4 bits (105), Expect = 4e-06
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 4 HEITRDEVDNYALQSQQKWKTANDAGVFKAEIEPVSLTIKRKEVKVEVDEHPRPQTTLEG 183
H I R D +A+ S ++ + A F+ EI PV + + R + V E P+ E
Sbjct: 170 HSIDRASQDAFAISSYKRAQNAQATKAFEQEIVPVEVPVGRGKPNKLVTEDEEPKNLNED 229
Query: 184 -LKKLPPVFKKEGLVTAGTASGISE 255
LK + VFK G VTA AS +++
Sbjct: 230 KLKSVRAVFKSNGTVTAANASTLND 254
>SPAC1556.03 |azr1||serine/threonine protein phosphatase
Azr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 324 GWAYVGVDPSIMGIGPVPAIENL 392
GWA VG+DPSI G V I+ +
Sbjct: 73 GWANVGIDPSIFSWGLVREIKKV 95
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 27.5 bits (58), Expect = 1.9
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +3
Query: 210 KGRSSHCWN-CFWYQRGAGALVLVSEEAAKNLKPLARLVGWAYVGVDPSIMGIGPVPAIE 386
KG +H N F++ + +V A N K LV V + ++ VP ++
Sbjct: 153 KGHKNHLENRSFFHDSESDNFKVVLSNCAINSKEDNNLVTEDRVNLGAKLL---LVP-VQ 208
Query: 387 NLLKVTKLTLNDVDLIEINEAFVAQTLS 470
NL+K+ K++ VDL I+ +F Q L+
Sbjct: 209 NLIKLLKVSKISVDLAVIDHSFQDQKLT 236
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 88 KAEIEPVSLTIKRKEVKVEVDEHPRPQTTLEGLKKLPPVFKKEGLVTAGT 237
+ IE V ++ KE K E D + T E ++ L +FKK +T+GT
Sbjct: 25 RENIEKV-ISNMEKEAKHEDDANTLQPKTEEEIESLAKLFKKPSCLTSGT 73
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +1
Query: 415 SMMSTLLRSTRPSWLR 462
SM T LRS+RPSW R
Sbjct: 516 SMEQTSLRSSRPSWTR 531
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -1
Query: 425 DIIEGEFGDFKKVLDGGHRPNAHDAGVHSHIGPAYE 318
D+I GE +F K H + H G H P E
Sbjct: 128 DVIGGEHANFSKWYFASHFNDGHAIGFHDMSSPIVE 163
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 348 PSIMGIGPVPAIENLLKVTKLTLNDVDLI 434
PSI P PA+ ++ ++T+ + DVDL+
Sbjct: 302 PSIYWRTPFPALADIPELTEFIVADVDLL 330
>SPCC1682.05c |||signal recognition particle subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 7 EITRDEVDNYALQSQQKWKTANDAGVFKAEIEPVSLTIKRKEVKVEVD 150
EIT+ +DN L+ +QK++T + + A V L I+R ++ VE D
Sbjct: 335 EITKSVLDNTGLEDEQKFQTLSICYTYLA-YNVVLLRIQR-DLAVEND 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,595
Number of Sequences: 5004
Number of extensions: 42385
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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