Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0722
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30177| Best HMM Match : No HMM Matches (HMM E-Value=.)             111   4e-25
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   4e-20
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)              87   9e-18
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)            57   1e-08
SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)            30   2.0  
SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13)                   29   4.6  
SB_39408| Best HMM Match : Cadherin (HMM E-Value=0)                    28   6.1  
SB_26503| Best HMM Match : Uso1_p115_C (HMM E-Value=3.8)               28   6.1  
SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)                28   6.1  
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  
SB_14900| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_30177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score =  111 bits (268), Expect = 4e-25
 Identities = 65/135 (48%), Positives = 82/135 (60%), Gaps = 2/135 (1%)
 Frame = +3

Query: 255 GAGALVLVSEEAAKN--LKPLARLVGWAYVGVDPSIMGIGPVPAIENLLKVTKLTLNDVD 428
           GA ALVL SE+A K+  L PLARLV ++  GVDP+IMGIGPVP+I+  L+    TL+D+D
Sbjct: 21  GAAALVLASEKAVKDHGLTPLARLVSYSINGVDPAIMGIGPVPSIKCALERAGKTLDDMD 80

Query: 429 LIEINEAFVAQTLSCAKALKLDMSKLKSTEAPPRWGHPLGASGSRITXXXXXXXXXXXXX 608
           +IE+NEAF  Q L+  K L LDMSK          GHP+G SG+R+T             
Sbjct: 81  IIEVNEAFAPQFLAVQKDLGLDMSKTNVNGGAIALGHPVGTSGARLTVHLTHEMMRKGLK 140

Query: 609 XXXXSACIRRGGRAS 653
               SACI  GG+ S
Sbjct: 141 YSIGSACI-GGGQES 154


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 44/81 (54%), Positives = 58/81 (71%)
 Frame = +1

Query: 1    RHEITRDEVDNYALQSQQKWKTANDAGVFKAEIEPVSLTIKRKEVKVEVDEHPRPQTTLE 180
            ++ ITR+E D +AL SQQ+W  A+++G F AEI PV +  K+   +  VDEHPRP+TT+E
Sbjct: 829  KYNITREECDQFALLSQQRWAAAHESGAFTAEIVPVPVKGKKGPEQFAVDEHPRPETTIE 888

Query: 181  GLKKLPPVFKKEGLVTAGTAS 243
             L KLP VFKK G V+AG AS
Sbjct: 889  QLAKLPAVFKKNGTVSAGNAS 909


>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 46/100 (46%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
 Frame = +3

Query: 255 GAGALVLV--SEEAAKNLKPLARLVGWAYVGVDPSIMGIGPVPAIENLLKVTKLTLNDVD 428
           GA  +VL+  +E  A+N+ PLAR+V WA  GVDPS+MG GP+PA    L      + DVD
Sbjct: 259 GAAVVVLMPYAEANARNVSPLARVVSWAQAGVDPSVMGTGPIPATRKALSKAGWKVEDVD 318

Query: 429 LIEINEAFVAQTLSCAKALKLDMSKLKSTEAPPRWGHPLG 548
           L E+NEAF AQ+ +  + L LD SK    +   R  H LG
Sbjct: 319 LFELNEAFAAQSCAVIRELGLDPSK-NVVDCETRLDHALG 357



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
 Frame = +1

Query: 7   EITRDEVDNYALQSQQKWKTANDAGVFKAEIEPVSLTIKRKEVKVEVDEHPRPQTTLEGL 186
           E++R+E DN+AL SQQ+ +TA  AG F  EI  VS+  +    +V  D+ PR   T+EGL
Sbjct: 174 EVSREEQDNFALTSQQRTETAQKAGYFSDEIVTVSIKTRAGLTEVNSDQFPRHGCTIEGL 233

Query: 187 KKLPP--VFKKEGLVTAGTASGISE 255
           +KL P  +F  +G V+AG  SG+++
Sbjct: 234 RKLKPCFLFDGKGTVSAGNTSGLND 258


>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
          Length = 415

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
 Frame = +1

Query: 1   RHEITRDEVDNYALQSQQKWKTANDAGVFKAEIEPVSLTIK--RKEVKVEVDEHPRPQTT 174
           ++ ITR+E D+YA+ S ++   A DAG FK E+ PV++  K  + ++  E DE  + + +
Sbjct: 68  KYNITREEQDDYAIHSYRRTAAAWDAGKFKQEVVPVNIPQKKGKPDIVFEEDEEYK-KVS 126

Query: 175 LEGLKKLPPVFKKE-GLVTAGTASGISE 255
            E    L  VFKKE G VTA  AS +++
Sbjct: 127 FEKFPSLKTVFKKENGTVTAANASTLND 154



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
 Frame = +3

Query: 255 GAGALVLVSEEAA-KN-LKPLARLVGWAYVGVDPSIMGIGPVPAIENLLKVTKLTLNDVD 428
           GA A+VL++ EAA KN + PLA +V +A   V P    I P  AI  +L++  L  +D+D
Sbjct: 155 GAAAVVLMTREAAEKNGVTPLASIVAFADAAVAPIDFPIAPAAAIPKVLRLAHLRKDDID 214

Query: 429 LIEINEAFVAQTLS 470
           + EINEAF A  L+
Sbjct: 215 MWEINEAFSAVALA 228


>SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)
          Length = 162

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 336 VGVDPSIMGIGPVPAIENLLKVTKLTLNDVDLIEINEAF 452
           +G+ P    + P  A   LL+ T L L+D+D+ E +EAF
Sbjct: 120 MGLKPKAY-LSPAYATPKLLEKTGLKLSDIDVFEFHEAF 157


>SB_30683| Best HMM Match : rve (HMM E-Value=1.9e-13)
          Length = 776

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 153 APSSSDHTRGPEETAPRLQKGRSSHCWNCFWYQRGAGALVLVS 281
           AP++    RGP+   P++  G S   WN F  + G   L L S
Sbjct: 40  APTAPPPARGPKLDRPKVDIGISIEEWNIFMRRWGFSVLDLAS 82


>SB_39408| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2389

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 408  LTLNDVDLIEINEAFVAQTLSCAKALKLDMSKLKSTEAPPRWGHPLG 548
            ++  ++  +      VAQT   AKALK+D+  +  T+  P    P G
Sbjct: 1472 MSFQELQSLATKVVLVAQTQQMAKALKIDVLSIDVTDPEPPRVDPTG 1518


>SB_26503| Best HMM Match : Uso1_p115_C (HMM E-Value=3.8)
          Length = 225

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +1

Query: 58  WKTANDAGVFKAEIEP----VSLTIKRKEVKVEVDEHPRPQTT 174
           W+T  D+G F ++       +SL +KR+E    + E P+P TT
Sbjct: 89  WRTIRDSGPFSSDTSLAAYLLSLELKRREQLGLMFEAPKPDTT 131


>SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 347

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
 Frame = +3

Query: 339 GVDPSIMGIGPVPAIENLLKVTKLTLNDVDLIEINEAFVAQTL----SCAKALKLD-MSK 503
           G  PS +       +EN LK +KLT+N +++ E    F+ + L    S +KA + D +++
Sbjct: 81  GDHPSFLDTDWNKKLENNLKTSKLTVNQLNVFENQINFLRRLLELACSTSKAFRADSLNR 140

Query: 504 LKS 512
           L+S
Sbjct: 141 LQS 143


>SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)
          Length = 224

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/70 (24%), Positives = 36/70 (51%)
 Frame = +3

Query: 324 GWAYVGVDPSIMGIGPVPAIENLLKVTKLTLNDVDLIEINEAFVAQTLSCAKALKLDMSK 503
           G+  V +  S   +G +  +    K+T ++ + ++ ++ +   + Q LS  +A KLD+ K
Sbjct: 119 GYKTVVMGASFRNVGQITGLTGCDKLT-ISPSLLEKLQNSNEAITQKLSSEEAGKLDIEK 177

Query: 504 LKSTEAPPRW 533
           ++  E   RW
Sbjct: 178 VEVDEKSFRW 187


>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 413 GEFGDFKKVLDGGHRPNAHDAGVHSHIGPAYEAS 312
           GE G+  K  + G    A +AG  S +G A EAS
Sbjct: 277 GEAGEVGKASEAGETGEASEAGEASEVGVAREAS 310


>SB_14900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 293 GGFLADQHQRSSTSLIPEAVPAVTRPSFLKTGGSFFRPSSVV*GRG 156
           G  L+ +H  ++ S +P+   A   P+F  T   +F P +V  GRG
Sbjct: 24  GNKLSKKHGGAADSALPQIRLAPYSPAFYFTSCDYFLPITVKIGRG 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,246,998
Number of Sequences: 59808
Number of extensions: 376354
Number of successful extensions: 1099
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)