Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0722
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical p... 111 3e-25
U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical pr... 68 5e-12
U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical pr... 61 8e-10
U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa ... 60 2e-09
M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical pr... 53 2e-07
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 29 2.3
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 29 2.3
D86473-1|BAA20377.1| 412|Caenorhabditis elegans 3-keto-acyl-CoA... 29 2.3
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 29 2.3
AL023847-7|CAA19548.1| 412|Caenorhabditis elegans Hypothetical ... 29 2.3
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 29 2.3
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 29 2.3
AF016429-1|AAB65365.2| 518|Caenorhabditis elegans Hypothetical ... 29 2.3
Z83233-7|CAB05764.2| 340|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z99772-1|CAB16921.1| 794|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z75550-14|CAA99932.1| 794|Caenorhabditis elegans Hypothetical p... 27 9.4
>Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical
protein F53A2.7 protein.
Length = 394
Score = 111 bits (268), Expect = 3e-25
Identities = 62/150 (41%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Frame = +3
Query: 198 PRLQKGRSSHCWNCFWYQRGAGALVLVSEEA--AKNLKPLARLVGWAYVGVDPSIMGIGP 371
P QK + N GA ALV+ E++ +KNLKPLAR+V ++ VG DP+IMGIGP
Sbjct: 235 PVFQKDGLVNAGNASGISDGAAALVVAGEDSVKSKNLKPLARVVAYSAVGCDPTIMGIGP 294
Query: 372 VPAIENLLKVTKLTLNDVDLIEINEAFVAQTLSCAKALKLDMSKLKSTEAPPRWGHPLGA 551
PAI +LK + L + D+D+ E+NEAF Q L+ + L + M KL GHPL A
Sbjct: 295 APAIREVLKKSGLKIGDIDIFEVNEAFAPQALAVQRELGIPMEKLNVNGGAIALGHPLAA 354
Query: 552 SGSRITXXXXXXXXXXXXXXXXXSACIRRG 641
SG+RI+ SACI G
Sbjct: 355 SGARISTHIVHELHRRNVKYGIGSACIGGG 384
Score = 93.5 bits (222), Expect = 1e-19
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = +1
Query: 1 RHEITRDEVDNYALQSQQKWKTANDAGVFKAEIEPVSLTIKRKEVKVEVDEHPRPQTTLE 180
++++TR E D +AL+SQ WK A +AGV+K EI +++ ++ E E+DEHPR TT E
Sbjct: 170 QYKVTRQEADEFALRSQTLWKKAQEAGVYKNEIVGITIKGRKGEESFEIDEHPR-ATTAE 228
Query: 181 GLKKLPPVFKKEGLVTAGTASGISE 255
L KL PVF+K+GLV AG ASGIS+
Sbjct: 229 SLAKLKPVFQKDGLVNAGNASGISD 253
>U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical
protein T02G5.7 protein.
Length = 390
Score = 68.1 bits (159), Expect = 5e-12
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Frame = +3
Query: 255 GAGALVLVSEEAA-KNLKPLARLVGWAYVGVDPSIMGIGPVPAIENLLKVTKLTLNDVDL 431
GA A V+V E A + PLA LV +A G P + PV A+ LLK + L ++D+ L
Sbjct: 253 GAVATVVVGENALPQGAHPLAELVAFAEAGRAPIDFTVAPVDAVRLLLKKSGLQVSDIAL 312
Query: 432 IEINEAFVAQTLSCAKALKLDMSKLKSTEAPPRWGHPLGASGSRI 566
E+NEAF L+ K L ++ S + GHPLG SG RI
Sbjct: 313 WELNEAFAVTVLAFIKELNIEPSVVNVKGGAVAIGHPLGMSGLRI 357
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +1
Query: 10 ITRDEVDNYALQSQQKWKTANDAGVFKAEIEPVSLTIKRKEVKVEVDEHPRPQTTLEGLK 189
ITR+E D YA++S +K A + F E+ PVS+ R EV + DE + + +
Sbjct: 170 ITREEQDAYAIESYKKASNAWSSEKFSEEVVPVSVKTSRSEVVITEDEEYK-KLIESKVS 228
Query: 190 KLPPVFKKE--GLVTAGTASGISE 255
L PVF ++ G +T AS +++
Sbjct: 229 SLKPVFVRDGTGTITPANASSLND 252
>U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical
protein T02G5.4 protein.
Length = 460
Score = 60.9 bits (141), Expect = 8e-10
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +3
Query: 255 GAGALVLVSEEAA--KNLKPLARLVGWAYVGVDPSIMGIGPVPAIENLLKVTKLTLNDVD 428
GA A++L S+EA +NLKPLAR++ + + P NLL+ + +DV
Sbjct: 322 GAAAVILASQEAVSEQNLKPLARILAYGDAATHQLDFAVAPTLLFPNLLQSAGVEQSDVA 381
Query: 429 LIEINEAFVAQTLSCAKALKLDMSKLKSTEAPPRWGHPLGASGSRI 566
E+NEAF L+ K L +D S + GHP+G SG+ +
Sbjct: 382 QWEVNEAFSCVPLAFIKKLGVDPSLVNPHGGAVSIGHPIGMSGASL 427
>U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa
thiolase protein 1 protein.
Length = 407
Score = 59.7 bits (138), Expect = 2e-09
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Frame = +3
Query: 255 GAGALVLVSEEAA--KNLKPLARLVGWAYVGVDPSIMGIGPVPAIENLLKVTKLTLNDVD 428
GA A+++ S+EA ++LKPLAR++ + P + P +L+ + +DV
Sbjct: 269 GAAAVIVASQEAVSEQSLKPLARILAYGDAATHPLDFAVAPTLMFPKILERAGVKQSDVA 328
Query: 429 LIEINEAFVAQTLSCAKALKLDMSKLKSTEAPPRWGHPLGASGSRI 566
E+NEAF L+ K L +D S + GHP+G SG+R+
Sbjct: 329 QWEVNEAFSCVPLAFIKKLGVDPSLVNPHGGAVSIGHPIGMSGARL 374
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/82 (31%), Positives = 43/82 (52%)
Frame = +1
Query: 10 ITRDEVDNYALQSQQKWKTANDAGVFKAEIEPVSLTIKRKEVKVEVDEHPRPQTTLEGLK 189
ITR + D YA+ S +K A + G E+ PV++ K+ V+ DE + +
Sbjct: 188 ITRKDQDEYAINSYKKSAKAWENGNIGPEVVPVNVKSKKGVTIVDKDEE-FTKVNFDKFT 246
Query: 190 KLPPVFKKEGLVTAGTASGISE 255
L VF+K+G +TA AS +++
Sbjct: 247 SLRTVFQKDGTITAANASTLND 268
>M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical
protein B0303.3 protein.
Length = 448
Score = 52.8 bits (121), Expect = 2e-07
Identities = 44/131 (33%), Positives = 60/131 (45%), Gaps = 20/131 (15%)
Frame = +3
Query: 234 NCFWYQRGAGALVLVSEE--AAKNLKPLARLVGWAYVGVDPSI-MGIGPVPAIENLLKVT 404
N + GA A ++++EE A KP A L + YV DP + + P I LL
Sbjct: 281 NASYLTDGASAALIMTEEYALANGYKPKAYLRDYLYVAQDPKDQLLLSPAYVIPKLLDKA 340
Query: 405 KLTLNDVDLIEINEAFVAQTLS----------CAKALK-------LDMSKLKSTEAPPRW 533
LTL DVD+ EI+EAF Q L+ C + +K + M KL
Sbjct: 341 GLTLKDVDVFEIHEAFAGQVLANLNAMDSDYFCKEQMKRSGKFGRVPMDKLNLWGGSLSI 400
Query: 534 GHPLGASGSRI 566
GHP GA+G R+
Sbjct: 401 GHPFGATGVRL 411
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 483 LKLDMSKLKSTEAPPRWGHPLGASGSRI 566
+ L + L+ST+APP G P+ SGS +
Sbjct: 582 INLTRAPLRSTDAPPACGSPVAPSGSSL 609
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 483 LKLDMSKLKSTEAPPRWGHPLGASGSRI 566
+ L + L+ST+APP G P+ SGS +
Sbjct: 426 INLTRAPLRSTDAPPACGSPVAPSGSSL 453
>D86473-1|BAA20377.1| 412|Caenorhabditis elegans 3-keto-acyl-CoA
thiolase protein.
Length = 412
Score = 29.5 bits (63), Expect = 2.3
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 14/93 (15%)
Frame = +3
Query: 255 GAGALVLVSEE-AAKN--LKPLARLVGWAYVGVD-PSI---------MGIGPVPAI-ENL 392
GA A VLVSE+ KN LK A + +G D PS+ +G + + + L
Sbjct: 226 GAAAAVLVSEKFLEKNPRLKAQAVEIVGLKLGTDEPSVFAENSNIKMIGFDMIQKLAKQL 285
Query: 393 LKVTKLTLNDVDLIEINEAFVAQTLSCAKALKL 491
TKLT NDV +IE+++ F L +A+ L
Sbjct: 286 WAETKLTPNDVQVIELHDCFAPNELITYEAIGL 318
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 483 LKLDMSKLKSTEAPPRWGHPLGASGSRI 566
+ L + L+ST+APP G P+ SGS +
Sbjct: 582 INLTRAPLRSTDAPPACGSPVAPSGSSL 609
>AL023847-7|CAA19548.1| 412|Caenorhabditis elegans Hypothetical
protein Y57A10C.6 protein.
Length = 412
Score = 29.5 bits (63), Expect = 2.3
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 14/93 (15%)
Frame = +3
Query: 255 GAGALVLVSEE-AAKN--LKPLARLVGWAYVGVD-PSI---------MGIGPVPAI-ENL 392
GA A VLVSE+ KN LK A + +G D PS+ +G + + + L
Sbjct: 226 GAAAAVLVSEKFLEKNPRLKAQAVEIVGLKLGTDEPSVFAENSNIKMIGFDMIQKLAKQL 285
Query: 393 LKVTKLTLNDVDLIEINEAFVAQTLSCAKALKL 491
TKLT NDV +IE+++ F L +A+ L
Sbjct: 286 WAETKLTPNDVQVIELHDCFAPNELITYEAIGL 318
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 483 LKLDMSKLKSTEAPPRWGHPLGASGSRI 566
+ L + L+ST+APP G P+ SGS +
Sbjct: 432 INLTRAPLRSTDAPPACGSPVAPSGSSL 459
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 483 LKLDMSKLKSTEAPPRWGHPLGASGSRI 566
+ L + L+ST+APP G P+ SGS +
Sbjct: 582 INLTRAPLRSTDAPPACGSPVAPSGSSL 609
>AF016429-1|AAB65365.2| 518|Caenorhabditis elegans Hypothetical
protein T21H3.4 protein.
Length = 518
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 4 HEITRDEVDNYALQSQQKWKTANDAGVFKAEIEPVSLTIKRKEVKVEVDEH 156
HE+ + + +N ++ + K G E+E VSL + +E ++E EH
Sbjct: 416 HELMKVKRENITVEVGRPTKKLLSHGAVPLEVEEVSLNVVNREYEIEKLEH 466
>Z83233-7|CAB05764.2| 340|Caenorhabditis elegans Hypothetical
protein K06B4.7 protein.
Length = 340
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/60 (36%), Positives = 29/60 (48%)
Frame = +3
Query: 273 LVSEEAAKNLKPLARLVGWAYVGVDPSIMGIGPVPAIENLLKVTKLTLNDVDLIEINEAF 452
L+ + KN K + V + Y DPS+ I I L+K T TLNDVD I A+
Sbjct: 91 LLDDLKFKNDKNYSHFVNF-YSLEDPSLADILKDRGIMKLVKRTPKTLNDVDQWSIMMAY 149
>Z99772-1|CAB16921.1| 794|Caenorhabditis elegans Hypothetical
protein H05L14.1 protein.
Length = 794
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 31 NYALQSQQKWKTANDAGVFKAEIEPVSLTI--KRKEVKVEVDEHPRPQTTLE-GLKKLPP 201
N ALQ+ + + AG I+P S ++ +E K+ + ++ +T ++ KK+ P
Sbjct: 224 NVALQTLDAIQYLHQAGFLNRNIKPASFSVGLNEEETKIYMTDYRLVRTHIDPSTKKVRP 283
Query: 202 VFKKEGLVTAGTA 240
+ GL GTA
Sbjct: 284 A--RTGLKYGGTA 294
>Z75550-14|CAA99932.1| 794|Caenorhabditis elegans Hypothetical
protein H05L14.1 protein.
Length = 794
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +1
Query: 31 NYALQSQQKWKTANDAGVFKAEIEPVSLTI--KRKEVKVEVDEHPRPQTTLE-GLKKLPP 201
N ALQ+ + + AG I+P S ++ +E K+ + ++ +T ++ KK+ P
Sbjct: 224 NVALQTLDAIQYLHQAGFLNRNIKPASFSVGLNEEETKIYMTDYRLVRTHIDPSTKKVRP 283
Query: 202 VFKKEGLVTAGTA 240
+ GL GTA
Sbjct: 284 A--RTGLKYGGTA 294
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,672,547
Number of Sequences: 27780
Number of extensions: 262904
Number of successful extensions: 763
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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