Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0721
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.5  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    27   3.4  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    27   3.4  
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    27   3.4  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    26   4.4  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   5.9  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 233  IYVSILLTFEPQYNVFIE 180
            +YVSIL T++P+   FIE
Sbjct: 1871 VYVSILKTYQPEVRAFIE 1888


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 36  LTISVAYRFGEWGNRNIGILWDRRP 110
           L  ++ + +  W NRN G+ W R P
Sbjct: 239 LVQNILWYYYSWSNRNSGLYWTRWP 263


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 134 FIYHQVDFRSTVPKYXNISVTPLSKPICDRNSQDFI 27
           +  HQ+     +P   N    P++ P+C R S+ FI
Sbjct: 734 YALHQLQPTDCLPDPENTGCLPINMPLCVRASRKFI 769


>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 93  LWDRRPKVDLMVDKRDHTSKYYIFRNF 173
           LWDRR K   + D  +H  K  IFR++
Sbjct: 116 LWDRRMKRLYIYDGAEHPYKANIFRSY 142


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 154 YFEVWSLLSTIRSTLGRRSQSXPIFRLP 71
           YFE W +  TIRS  G   +      LP
Sbjct: 172 YFETWKMWDTIRSACGYHPRLKVALELP 199


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 588 SCLAHLLRAIKFYINTVNNRRSTVIYRNSGQTFNL 484
           SCL  ++ A+    N+    +S + YRNS  T+ L
Sbjct: 749 SCLGDVIHALGNASNSTTKEKSHIPYRNSKLTYLL 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,938,895
Number of Sequences: 5004
Number of extensions: 61963
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)