Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0721
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0895 - 32804433-32804744,32804948-32805163,32805301-328056...    29   3.5  

>01_06_0895 -
           32804433-32804744,32804948-32805163,32805301-32805642,
           32805778-32806020,32806130-32806582,32806898-32807113,
           32808360-32808432,32808750-32808790,32809027-32809118,
           32809222-32809333,32810003-32810078,32810154-32810301,
           32811195-32811336,32812120-32812196,32813568-32813619
          Length = 864

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 12  SCYLNNKILTISVAYRFGEWGNRNIGILWD 101
           S Y +N  +TIS   RFG WG  N G ++D
Sbjct: 500 SFYSDNGTMTISTPVRFGPWGG-NGGTIFD 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,324,398
Number of Sequences: 37544
Number of extensions: 300908
Number of successful extensions: 487
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)